Research output per year
Research output per year
Personal profile
Fields of Science
- 1182 Biochemistry, cell and molecular biology
- Ovarian cancer
- Single-cell transcriptomics
International and National Collaboration
Publications and projects within past five years.
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Longitudinal single-cell RNA-seq analysis reveals stress-promoted chemoresistance in metastatic ovarian cancer
Zhang, K., Erkan, E. P., Jamalzadeh, S., Dai, J., Andersson, N., Kaipio, K., Lamminen, T., Mansuri, N., Huhtinen, K., Carpen, O., Hietanen, S., Oikkonen, J., Hynninen, J., Virtanen, A., Häkkinen, A., Hautaniemi, S. & Väharautio, A., Feb 2022, In: Science Advances. 8, 8, 18 p., 1831.Research output: Contribution to journal › Article › Scientific › peer-review
Open AccessFile -
miQC: An adaptive probabilistic framework for quality control of single-cell RNA-sequencing data
Hippen, A. A., Falco, M. M., Weber, L. M., Erkan, E. P., Zhang, K., Doherty, J. A., Vähärautio, A., Greene, C. S. & Hicks, S. C., Aug 2021, In: PLoS Computational Biology. 17, 8, 18 p., 1009290.Research output: Contribution to journal › Article › Scientific › peer-review
Open AccessFile -
Network-guided identification of cancer-selective combinatorial therapies in ovarian cancer
He, L., Bulanova, D., Oikkonen, J., Häkkinen, A., Zhang, K., Zheng, S., Wang, W., Erkan, E. P., Carpén, O., Joutsiniemi, T., Hietanen, S., Hynninen, J., Huhtinen, K., Hautaniemi, S., Vähärautio, A., Tang, J., Wennerberg, K. & Aittokallio, T., 3 Nov 2021, In: Briefings in Bioinformatics. 22, 6, 12 p., 272.Research output: Contribution to journal › Article › Scientific › peer-review
Open AccessFile -
PRISM: recovering cell-type-specific expression profiles from individual composite RNA-seq samples
Häkkinen, A., Zhang, K., Alkodsi, A., Andersson, N., Erkan, E. P., Dai, J., Kaipio, K., Lamminen, T., Mansuri, N., Huhtinen, K., Vähärautio, A., Carpen, O., Hynninen, J., Hietanen, S., Lehtonen, R. & Hautaniemi, S., 15 Sep 2021, In: Bioinformatics. 37, 18, p. 2882-2888 7 p.Research output: Contribution to journal › Article › Scientific › peer-review
Open AccessFile -
Circulating Tumor Biomarkers in Meningiomas Reveal a Signature of Equilibrium Between Tumor Growth and Immune Modulation
Erkan, E. P., Ströbel, T., Dorfer, C., Sonntagbauer, M., Weinhäusel, A., Saydam, N. & Saydam, O., 10 Oct 2019, In: Frontiers in oncology . 9, 9 p., 1031.Research output: Contribution to journal › Article › Scientific › peer-review
Open AccessFile