Projects per year
Personal profile
Curriculum vitae
Data/ML Scientist | Systems Biology/Medicine | Development Manager AI @ HUS Helsinki University Hospital | University of Helsinki | iCAN | PHEMS | OMOP | Swarmlearning
CURRENT POSITIONS
2022 – now Development Manager AI – HUS Helsinki University Hospital
2023 – now Data Scientist – iCAN Digital Precision Cancer Medicine, University of Helsinki
2024 – now National Node Lead – OHDSI Finland
EDUCATION
PhD in Engineering: “Parameter identification in system biology”
Faculty of Engineering, University of Liege, Belgium, Advisor: Dr. Eric Bullinger
Research visits:
Hamilton Institute, National University of Ireland Maynooth
Industrial Control Centre, Strathclyde University, UK
MEng in Engineering Cybernetics with major in Biochemical Engineering
Institute for System Dynamics & Automatic Control, University of Stuttgart, Germany. Advisor: Prof. Ernst Dieter Gilles
Research visits:
Thomas Jefferson University, Philadelphia, PA, USA
Academic Experience
2019 – 2022 Assistant Professor (above the bar) – UCD School of Medicine, University College Dublin
2015 – 2022 Principal Investigator – Systems Biology Ireland, University College Dublin, Ireland
POSTDOC EXPERIENCE
2011 – 2015 Postdoctoral Research Fellow I & II
Systems Biology Ireland, University College Dublin, Ireland
Industrial Experience
2006 – 2006 BASF Chemical Company, Ludwigshafen, Germany
Industrial Research Internship: Biochemical batch-process optimisation
Innovation & Entrepreneurship
2022 – now Established swarm-learning capabilities across the 3 largest Finnish University hospitals for federated machine learning using real-world clinical data.
2018 Patent Application: Method for predicting the effectiveness of chemotherapy treatments IPO No. GB1817651.1
2015 Founder OncoNamics, a precision medicine venture developing personalised computational tools for predicting cancer-therapy (see Irish Medical Times)
2015 NDRC Future Health pre-accelerator programme as idea owner of OncoNamics.
Curriculum vitae
CURRENT POSITIONS
2022 – now Development Manager AI – HUS Helsinki University Hospital
2023 – now Data Scientist – iCAN Digital Precision Cancer Medicine, University of Helsinki
2024 – now National Node Lead – OHDSI Finland
EDUCATION
PhD in Engineering: “Parameter identification in system biology”
Faculty of Engineering, University of Liege, Belgium, Advisor: Dr. Eric Bullinger
Research visits:
Hamilton Institute, National University of Ireland Maynooth
Industrial Control Centre, Strathclyde University, UK
MEng in Engineering Cybernetics with major in Biochemical Engineering
Institute for System Dynamics & Automatic Control, University of Stuttgart, Germany. Advisor: Prof. Ernst Dieter Gilles
Research visits:
Thomas Jefferson University, Philadelphia, PA, USA
Academic Experience
2019 – 2022 Assistant Professor (above the bar) – UCD School of Medicine, University College Dublin
2015 – 2022 Principal Investigator – Systems Biology Ireland, University College Dublin, Ireland
POSTDOC EXPERIENCE
2011 – 2015 Postdoctoral Research Fellow I & II
Systems Biology Ireland, University College Dublin, Ireland
Industrial Experience
2006 – 2006 BASF Chemical Company, Ludwigshafen, Germany
Industrial Research Internship: Biochemical batch-process optimisation
Innovation & Entrepreneurship
2022 – now Established swarm-learning capabilities across the 3 largest Finnish University hospitals for federated machine learning using real-world clinical data.
2018 Patent Application: Method for predicting the effectiveness of chemotherapy treatments IPO No. GB1817651.1
2015 Founder OncoNamics, a precision medicine venture developing personalised computational tools for predicting cancer-therapy (see Irish Medical Times)
2015 NDRC Future Health pre-accelerator programme as idea owner of OncoNamics.
Education/Academic qualification
PhD, University of Liege
Engineering Cybernetics, MEng, University of Stuttgart
External positions
Development Manager Artificial Intelligence , Helsinki University Hospital
2022 → …
Fields of Science
- 3111 Biomedicine
- 213 Electronic, automation and communications engineering, electronics
Projects
- 1 Active
-
iCAN - Digital precision cancer medicine for discoveries and improved treatments
Mäkelä, T. (Project manager), Adhikari, S. (Participant), Aldahdooh, J. M. F. (Participant), Ariotta, V. (Participant), Arjama, M. A. (Participant), Atarsaikhan, G. (Participant), Bao, J. (Participant), Barreiro, K. (Participant), Bhalke, M. S. (Participant), Bollepalli, S. (Participant), Brandt, J. A. J. (Participant), Chernenko, A. (Participant), Dashi, G. (Participant), Eloranta, K. (Participant), Eriksson, M. R. (Participant), Feodoroff, M. J. (Participant), Fey, E. (Participant), Gerber, L. J. (Participant), Grönholm, M. (Participant), Hannula, S. A. (Participant), Heistman, V. (Participant), Henriksson, M. E. J. (Participant), Hiitola, E. T. J. (Participant), Huttunen, A. T. (Participant), Hyyppä, S. P. P. (Participant), Högel-Starck, C. S. P. (Participant), Ianevski, A. (Participant), Ikonen, N. (Participant), Jansouz, S. (Participant), Jha, S. (Participant), Junquera Mencía, A. (Participant), Kalashnikov, I. (Participant), Kampanellou, E. (Participant), Karabayev, D. (Participant), Karhemo, P.-R. (Participant), Karling, T. S. (Participant), Kekkonen, J. (Participant), Kolikova, Y. (Participant), Krami Senhaji, O. (Participant), Kuisma-van der Linden, M. S. (Participant), Kumari, R. (Participant), Kuosmanen, A. (Participant), Kurki, V. (Participant), Kuusela, S. (Participant), Kücükel, H. (Participant), Langohr, L. (Participant), Lavikka, K. A. (Participant), Le Joncour, V. (Participant), Lehto, T.-P. (Participant), Leivonen, S.-K. (Participant), Liljeström, M. (Participant), Lindfors, I. S. (Participant), Lindgren, H. (Participant), Luck, T. J. (Participant), Lähdeniemi, I. A. K. (Participant), Maarala, A. I. (Participant), Maljanen, K. J. (Participant), Marchi, G. (Participant), Martikainen, E. M. (Participant), Meriranta, L. (Participant), Metsäranta, N. A. C. (Participant), Miihkinen, M. S. (Participant), Moradi, N. (Participant), Nader, K. M. (Participant), Nagaraj, A. (Participant), Nguyen, M. (Participant), Niemeyer, F. (Participant), Niemiec, I. (Participant), Nylén, M. M. (Participant), Palin, K. (Participant), Palva, A. (Participant), Parsons, A. O. (Participant), Perez Villatoro, F. R. (Participant), Pietiäinen, V. (Participant), Pirinen, I. E. (Participant), Pirttikoski, A. A. (Participant), Pitko, I. M. (Participant), Polianskyte-Prause, Z. (Participant), Puhka, M. (Participant), Quintero, I. B. (Participant), Rachidi, S. E. (Participant), Rajalaakso, M. T. (Participant), Rodosthenous, R. (Participant), Saad, J. (Participant), Sanjaya, P. (Participant), Seppälä, T. T. (Participant), Seref Vujaklija, C. (Participant), Shah, S. (Participant), Sorri, S. P. (Participant), Suni, V. (Participant), Suutala, A. (Participant), Suvela, M. (Participant), Sysivirta, L. K. M. (Participant), Udayani, J. E. (Participant), Verkasalo, H. M. (Participant), Viiri, L. E. (Participant), Vilkkavaara Cancocak, Y. (Participant), Vähärautio, A. (Participant), Vänttinen, I. M. (Participant), Västrik, I. (Participant), Väänänen, J. (Participant), Wang, W. (Participant) & Zhang, X. (Participant)
Suomen Akatemia Projektilaskutus, Academy of Finland
01/09/2022 → 31/12/2026
Project: Research Council of Finland: Finnish Flagship Programme
Activities
- 1 Organisation and participation in conferences, workshops, courses, seminars
-
iCAN retreat 2024
Kremneva, E. (Chair of organizing committee), Kolikova, Y. (Member of organizing committee), Laakkonen, P. (Member of organizing committee), Vanharanta, S. (Member of organizing committee), Varjosalo, M. (Member of organizing committee), Wahl, H. (Member of organizing committee), Sankkila-Forsström, S. S. (Member of organizing committee), Duàn, H. (Speaker: Presenter), Karhemo, P.-R. (Speaker: Presenter), Miihkinen, M. S. (Speaker: Presenter), Liljeström, M. (Member of organizing committee), Pietiäinen, V. (Speaker: Presenter), Ganesan, A. (Poster Presentation), Saad, J. (Poster Presentation), Holmström, S. (Poster Presentation), Brodkin, J. H. (Poster Presentation), Mendoza Ortiz, E. D. (Poster Presentation), Sundaresan, S. (Poster Presentation), Chiaro, J. (Poster Presentation), Giannoula, Y. (Poster Presentation), Portaankorva, A. M. (Speaker: Presenter), Mustjoki, S. (Speaker: Presenter), Mäkelä, T. (Speaker: Presenter), Atarsaikhan, G. (Poster Presentation), Filppu, P. (Poster Presentation), Russo, S. (Poster Presentation), Pikkusaari, S. K. (Poster Presentation), Ryzhenkov, A. (Poster Presentation), Newman, R. G. D. (Speaker: Presenter), Arffman, M. E. (Speaker: Presenter), Kumari, R. (Poster Presentation), Leppiniemi, S. A. (Poster Presentation), Sanjaya, P. (Poster Presentation), Feodoroff, M. J. (Poster Presentation), Karabayev, D. (Poster Presentation), Jäntti, J. M. (Poster Presentation), Wong Ramirez, J. R. C. (Poster Presentation), Kalander, K. O. (Poster Presentation), Bouhlal, J. O. V. (Speaker: Presenter), Kuusela, S. (Speaker: Presenter), Fey, E. (Speaker: Presenter), Krami Senhaji, O. (Poster Presentation), Moradi, N. (Poster Presentation), Polso, M. M. M. (Poster Presentation), Antignani, G. (Poster Presentation), Maljanen, K. J. (Poster Presentation), Langohr, L. (Poster Presentation), Anil, A. (Poster Presentation), Smolander, P. J. (Poster Presentation), Feodoroff, M. J. (Poster Presentation), Alsaed, B. (Poster Presentation), Mogollon Figueroa, I. (Poster Presentation), Ryzhenkov, A. (Poster Presentation) & Henriksson, M. E. J. (Poster Presentation)
3 Oct 2024Activity: Participating in or organising an event types › Organisation and participation in conferences, workshops, courses, seminars