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Publications 2003 2019

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Conference contribution
2011

Minimum mutation algorithm for gapless metabolic network evolution

Pitkänen, E., Arvas, M. & Rousu, J., 2011, Bioinformatics 2011: International Conference of Bioinformatics Models, Methods and Algorithms. Insticc Press

Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

Structured Output Prediction of Novel Enzyme Function with Reaction Kernels

Astikainen, K., Holm, L., Pitkänen, E., Szedmak, S. & Rousu, J., 28 Feb 2011, Biomedical Engineering Systems and Technologies: Third International Joint Conference, BIOSTEC 2010, Valencia, Spain, January 20-23, 2010, Revised Selected Papers. Fred, A., Filipe, J. & Gamboa, H. (eds.). Springer, p. 367-379 13 p. (Communications of Computer and Information Science; vol. 127).

Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

2010

Reaction Kernels: Structured Output Prediction Approaches for Novel Enzyme Function

Astikainen, K., Pitkänen, E., Rousu, J., Holm, L. & Szedmak, S., 20 Jan 2010, Proceedings of the First International Conference on Bioinformatics. Fred, A., Filipe, J. & Gamboa, H. (eds.). The Institute for Systems and Technologies of Information, Control and Communication, p. 48-55

Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

2008

A computational method for reconstructing gapless metabolic networks

Pitkänen, E., Rantanen, A., Rousu, J. & Ukkonen, E., 2008, Bioinformatics Research and Development: proceedings. p. 288-302 15 p. (Communications in computer and information science; vol. 13).

Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

2007

Towards structured output prediction of enzyme function (extended abstract)

Astikainen, K., Holm, L., Pitkänen, E., Szedmak, S. & Rousu, J., 2007, Proceedings of the International Workshop on Machine Learning in Systems Biology 2007, MLSB'07, September 24-25, 2007, Evry, France: Universite d'Evry-Val d'Essonne 2007. p. 27-32 6 p.

Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

2006

Ab initio prediction of molecular fragments from tandem mass spectrometry data

Heinonen, M., Rantanen, A., Mielikäinen, T., Pitkänen, E., Kokkonen, J. & Rousu, J., 2006, German Conference on Bioinformatics, GCB 2006, Tubingen, Germany, September 19-22, 2006. p. 40-53 14 p.

Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

Pathway assistant: a web portal for metabolic modelling

Parikka, P., Pitkänen, E., Rantanen, A., Åkerlund, A. & Ukkonen, E., 2006, NETTAB 2006: Sixth International Workshop on Distributed Applications, Web Services, Tools and GRID Infrastructures for Bioinformatics, July, 10th-13th, 2006, Santa Margherita di Pula, Cagliari, Italy : 2006. p. 90-96 7 p.

Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

2005

Finding feasible pathways in metabolic networks

Pitkänen, E., Rantanen, A., Rousu, J. H. & Ukkonen, E., 2005, Proceedings of the Panhellenic Conference on Informatics. Springer-Verlag, p. 123-133 11 p. (Lecture Notes in Computer Science; vol. 3746).

Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

Flow analysis of metabolite fragments for flux estimation

Rantanen, A., Rousu, J., Pitkänen, E., Maaheimo, H. & Ukkonen, E., 2005, Third international workshop on computational methods in systems biology: 2005. p. 242-255 14 p.

Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

2003

A method for estimating metabolic fluxes from incomplete isotopomer information

Rousu, J., Rantanen, A., Maaheimo, H., Pitkänen, E., Saarela, K. & Ukkonen, E., 2003, Computational Methods in Systems Biology: First International Workshop, CMSB 2003 Rovereto, Italy, February 24-26, 2003 Proceedings. Priami, C. (ed.). Berlin Heidelberg: Springer, p. 88-103 16 p. (Lecture Notes in Computer Science; vol. 2602).

Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review