Research Output per year
Personal profile
Fields of Science
- 113 Computer and information sciences
- Data science
- Bioinformatics, Systems biology
- Machine Learning
- Algorithms and data structures
International and National Collaboration
Publications and projects within past five years.
Publications
MODER2: First-order Markov Modeling and Discovery of Monomeric and Dimeric Binding Motifs
Toivonen, J., Das, P., Taipale, J. & Ukkonen, E., 1 May 2020, In : Bioinformatics. 36, 9, p. 2690-2696 7 p.Research output: Contribution to journal › Article › Scientific › peer-review
Open Access
File
18th International Workshop on Algorithms in Bioinformatics (WABI 2018)
Parida, L. (ed.) & Ukkonen, E. (ed.), 26 Jul 2018, Schloss Dagstuhl - Leibniz-Zentrum für Informatik. (Leibniz International Proceedings in Informatics; vol. 113)Research output: Book/Report › Anthology or special issue › Scientific › peer-review
Open Access
Modular discovery of monomeric and dimeric transcription factor binding motifs for large data sets
Toivonen, J., Kivioja, T., Jolma, A., Yin, Y., Taipale, J. & Ukkonen, E., 4 May 2018, In : Nucleic Acids Research. 46, 8, 16 p.Research output: Contribution to journal › Article › Scientific › peer-review
Open Access
File
Accurate self-correction of errors in long reads using de Bruijn graphs
Salmela, L., Walve, R., Rivals, E. & Ukkonen, E., 15 Mar 2017, In : Bioinformatics. 33, 6, p. 799-806 8 p.Research output: Contribution to journal › Article › Scientific › peer-review
Open Access
File
Fast motif matching revisited: high-order PWMs, SNPs and indels
Korhonen, J. H., Palin, K., Taipale, J. & Ukkonen, E., 15 May 2017, In : Bioinformatics. 33, 4, p. 514-521 8 p.Research output: Contribution to journal › Article › Scientific › peer-review
Open Access
Prizes
Biotechnology Prize of 1996, awarded by the ALKO Group Ltd
Esko Ukkonen (Recipient), 1996
Prize: Prizes and awards
Foreign Member of the Estonian Academy of Science
Esko Ukkonen (Recipient), 2 Dec 2015
Prize: Prizes and awards
Activities
Annual Symposium on Combinatorial Pattern Matching
Esko Ukkonen (Scientific Committee Member)1 Jan 2018 → 31 Mar 2018
Activity: Participating in or organising an event types › Organisation and participation in conferences, workshops, courses, seminars
Prague Stringology Conference 2018
Esko Ukkonen (Speaker: Keynote)27 Aug 2018
Activity: Participating in or organising an event types › Organisation and participation in conferences, workshops, courses, seminars
University of Tampere (External organisation)
Esko Ukkonen (Assessment)1 Sep 2018 → 30 Oct 2018
Activity: Membership types › Assessment of candidates for academic posts
18th Workshop on Algorithms in Bioinformatics
Esko Ukkonen (Scientific Committee Chair)1 Jan 2018 → 31 Dec 2018
Activity: Participating in or organising an event types › Organisation and participation in conferences, workshops, courses, seminars
Aalto University (External organisation)
Esko Ukkonen (Expert member)Feb 2018 → Jun 2018
Activity: Membership types › Assessment of candidates for academic posts
Press / Media
Interview for Tieteen tietotekniikka (ICT for Science)
01/01/2009
1 Media contribution
Press/Media: Press / Media