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Personal profile

Keywords

  • 113 Computer and information sciences
  • Data science
  • Bioinformatics, Systems biology
  • Machine Learning
  • Algorithms and data structures

International and National Collaboration Publications and projects within past five years.

Publications 1983 2018

18th International Workshop on Algorithms in Bioinformatics (WABI 2018)

Parida, L. (ed.) & Ukkonen, E. (ed.), 26 Jul 2018, Schloss Dagstuhl - Leibniz-Zentrum für Informatik. (Leibniz International Proceedings in Informatics; vol. 113)

Research output: Book/ReportAnthology or special issueScientificpeer-review

Open Access

Modular discovery of monomeric and dimeric transcription factor binding motifs for large data sets

Toivonen, J., Kivioja, T., Jolma, A., Yin, Y., Taipale, J. & Ukkonen, E., 4 May 2018, In : Nucleic Acids Research. 46, 8, 16 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
File

Accurate self-correction of errors in long reads using de Bruijn graphs

Salmela, L., Walve, R., Rivals, E. & Ukkonen, E., 15 Mar 2017, In : Bioinformatics. 33, 6, p. 799-806 8 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
File

Fast motif matching revisited: high-order PWMs, SNPs and indels

Korhonen, J. H., Palin, K., Taipale, J. & Ukkonen, E., 15 May 2017, In : Bioinformatics. 33, 4, p. 514-521 8 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access

Seed-driven Learning of Position Probability Matrices from Large Sequence Sets

Toivonen, J., Taipale, J. & Ukkonen, E., 2017, 17th International Workshop on Algorithms in Bioinformatics (WABI 2017). Schwartz, R. & Reinert, K. (eds.). Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 13 p. 25. (Leibniz International Proceedings in Informatics (LIPIcs); vol. 88).

Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

Open Access
File

Prizes

Foreign Member of the Estonian Academy of Science

Esko Ukkonen (Recipient), 2 Dec 2015

Prize: Prizes and awards

Honorary Doctor of Aalto University

Esko Ukkonen (Recipient), 10 Oct 2014

Prize: Prizes and awards

Medix-prize

Esko Ukkonen (Recipient), 2007

Prize: Prizes and awards

Science Prize of the City of Helsinki 2007

Esko Ukkonen (Recipient), 2007

Prize: Prizes and awards

Activities 1991 2018

Aalto University (External organisation)

Esko Ukkonen (Expert member)
Feb 2018Jun 2018

Activity: Membership typesAssessment of candidates for academic posts

Annual Symposium on Combinatorial Pattern Matching

Esko Ukkonen (Scientific Committee Member)
1 Jan 201831 Mar 2018

Activity: Participating in or organising an event typesOrganisation and participation in conferences, workshops, courses, seminars

University of Tampere (External organisation)

Esko Ukkonen (Assessment)
1 Sep 201830 Oct 2018

Activity: Membership typesAssessment of candidates for academic posts

Prague Stringology Conference 2018

Esko Ukkonen (Speaker: Keynote)
27 Aug 2018

Activity: Participating in or organising an event typesOrganisation and participation in conferences, workshops, courses, seminars

18th Workshop on Algorithms in Bioinformatics

Esko Ukkonen (Scientific Committee Chair)
1 Jan 201831 Dec 2018

Activity: Participating in or organising an event typesOrganisation and participation in conferences, workshops, courses, seminars

Press / Media

Interview for Tieteen tietotekniikka (ICT for Science)

Esko Ukkonen

01/01/2009

1 media contribution

Press/Media: Press / Media

Interview for Perspektiivi

Esko Ukkonen

01/01/2008

1 media contribution

Press/Media: Press / Media