Personal profile
Fields of Science
- 113 Computer and information sciences
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Pan-cancer tumor microenvironment profiling with multiplexed immunofluorescence microscopy and self-supervised learning
Atarsaikhan, G., Mogollon Figueroa, I., Välimäki, K. E., Mirtti, T., Pellinen, T. & Paavolainen, L., 22 Mar 2024.Research output: Conference materials › Abstract › peer-review
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Application of Self Supervised Vision Transformers for Multiplexed Microscopy Images and Its Challenges
Atarsaikhan, G., Mogollon Figueroa, I., Välimäki, K., Pellinen, T., Mirtti, T. & Paavolainen, L., 16 Dec 2023.Research output: Conference materials › Paper › peer-review
Open AccessFile -
Deep attentive time warping
Matsuo, S., Wu, X., Atarsaikhan, G., Kimura, A., Kashino, K., Iwana, B. K. & Uchida, S., Apr 2023, In: Pattern Recognition. 136, 13 p., 109201.Research output: Contribution to journal › Article › Scientific › peer-review
Open AccessFile -
Typographic Design Generation Using Neural Style Transfer
Atarsaikhan, G., 22 Mar 2022Research output: Thesis › Doctoral Thesis › Monograph
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Attention to Warp: Deep Metric Learning for Multivariate Time Series
Matsuo, S., Wu, X., Atarsaikhan, G., Kimura, A., Kashino, K., Iwana, B. K. & Uchida, S., 2021, Document Analysis and Recognition - ICDAR 2021 - 16th International Conference, Proceedings. Lladós, J., Lopresti, D. & Uchida, S. (eds.). Springer Science and Business Media Deutschland GmbH, p. 350-365 16 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 12823 LNCS).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Scientific › peer-review
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Uncovering patterns in cancer cells with visual representation learning
Paavolainen, L. (Project manager), Atarsaikhan, G. (Participant), Bourgogne, E. A. (Participant) & Mogollon Figueroa, I. (Participant)
01/09/2024 → 31/08/2026
Project: Research Council of Finland: Academy Research Fellow's research expenses
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PanCanPro: Decoding pan-cancer tumor microenvironment with integrative single-cell spatial profiling
Paavolainen, L. (Project manager), Atarsaikhan, G. (Participant) & Mahdavi, F. (Participant)
01/09/2024 → 31/08/2028
Project: Research Council of Finland: Academy Project
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iCAN - Digital precision cancer medicine for discoveries and improved treatments
Mäkelä, T. (Project manager), Adhikari, S. (Participant), Aldahdooh, J. M. F. (Participant), Ariotta, V. (Participant), Arjama, M. A. (Participant), Atarsaikhan, G. (Participant), Bao, J. (Participant), Barreiro, K. (Participant), Bhalke, M. S. (Participant), Bollepalli, S. (Participant), Brandt, J. A. J. (Participant), Chernenko, A. (Participant), Dashi, G. (Participant), Eloranta, K. (Participant), Eriksson, M. R. (Participant), Feodoroff, M. J. (Participant), Fey, E. (Participant), Gerber, L. J. (Participant), Grönholm, M. (Participant), Hannula, S. A. (Participant), Heistman, V. (Participant), Henriksson, M. E. J. (Participant), Hiitola, E. T. J. (Participant), Huttunen, A. T. (Participant), Hyyppä, S. P. P. (Participant), Högel-Starck, C. S. P. (Participant), Ianevski, A. (Participant), Ikonen, N. (Participant), Jansouz, S. (Participant), Jha, S. (Participant), Junquera Mencía, A. (Participant), Kalashnikov, I. (Participant), Kampanellou, E. (Participant), Karabayev, D. (Participant), Karhemo, P.-R. (Participant), Karling, T. S. (Participant), Kekkonen, J. (Participant), Kolikova, Y. (Participant), Krami Senhaji, O. (Participant), Kuijjer, M. (Participant), Kuisma-van der Linden, M. S. (Participant), Kumari, R. (Participant), Kuosmanen, A. (Participant), Kurki, V. (Participant), Kuusela, S. (Participant), Kücükel, H. (Participant), Langohr, L. (Participant), Lavikka, K. A. (Participant), Le Joncour, V. (Participant), Lehto, T.-P. (Participant), Leivonen, S.-K. (Participant), Liljeström, M. (Participant), Lindfors, I. S. (Participant), Lindgren, H. (Participant), Luck, T. J. (Participant), Lähdeniemi, I. A. K. (Participant), Maarala, A. I. (Participant), Maljanen, K. J. (Participant), Marchi, G. (Participant), Martikainen, E. M. (Participant), Meriranta, L. (Participant), Metsäranta, N. A. C. (Participant), Miihkinen, M. S. (Participant), Moradi, N. (Participant), Nader, K. M. (Participant), Nagaraj, A. (Participant), Nguyen, M. (Participant), Niemeyer, F. (Participant), Niemiec, I. (Participant), Nylén, M. M. (Participant), Palin, K. (Participant), Palva, A. (Participant), Parsons, A. O. (Participant), Peltonen, J. H. H. (Participant), Perez Villatoro, F. R. (Participant), Pietiäinen, V. (Participant), Pirinen, I. E. (Participant), Pirttikoski, A. A. (Participant), Pitko, I. M. (Participant), Polianskyte-Prause, Z. (Participant), Puhka, M. (Participant), Quintero, I. B. (Participant), Rachidi, S. E. (Participant), Rajalaakso, M. T. (Participant), Rodosthenous, R. (Participant), Saad, J. (Participant), Sanjaya, P. (Participant), Seppälä, T. T. (Participant), Seref Vujaklija, C. (Participant), Shah, S. (Participant), Sorri, S. P. (Participant), Suni, V. (Participant), Suutala, A. (Participant), Suvela, M. (Participant), Sysivirta, L. K. M. (Participant), Udayani, J. E. (Participant), Verkasalo, H. M. (Participant), Viiri, L. E. (Participant), Vilkkavaara Cancocak, Y. (Participant), Vähärautio, A. (Participant), Vänttinen, I. M. (Participant), Västrik, I. (Participant), Väänänen, J. (Participant), Wang, W. (Participant) & Zhang, X. (Participant)
Suomen Akatemia Projektilaskutus, Academy of Finland
01/09/2022 → 31/12/2026
Project: Research Council of Finland: Finnish Flagship Programme
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Uncovering patterns in cancer cells with visual representation learning
Paavolainen, L. (Project manager), Atarsaikhan, G. (Participant), Mogollon Figueroa, I. (Participant) & Sanian, M. V. (Participant)
01/09/2021 → 31/08/2026
Project: Research project
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Pan-cancer tumor microenvironment exploration with vision transformers
Paavolainen, L. (Project manager), Atarsaikhan, G. (Participant), Mogollon Figueroa, I. (Participant) & Mogollon Figueroa, I. (Participant)
Syöpäsäätiö sr Cancerstiftelsen sr
01/01/2023 → 31/12/2024
Project: Foundations (Private Foundations, Non-Profit Foundations, Charitable Trusts)
Datasets
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Image-based profiling of healthy donor immune cells with Blood Cell Painting
Paavolainen, L. (Creator), Högel-Starck, C. S. P. (Creator), Timonen, V. A. (Creator), Atarsaikhan, G. (Creator), Mogollon Figueroa, I. (Creator), Polso, M. M. M. (Creator), Hassinen, A. (Creator), Pietiäinen, V. (Creator) & Pitkänen, E. (Creator), European Bioinformatics Institute, 14 Oct 2025
DOI: 10.6019/S-BIAD2344
Dataset
Activities
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AI Day 2024 + Nordic AI Meet
Atarsaikhan, G. (Poster Presentation)
21 Oct 2024 → 22 Oct 2024Activity: Participating in or organising an event types › Organisation and participation in conferences, workshops, courses, seminars
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EMBO | EMBL Symposium: AI and biology
Atarsaikhan, G. (Poster Presentation)
12 Mar 2024 → 15 Mar 2024Activity: Participating in or organising an event types › Organisation and participation in conferences, workshops, courses, seminars
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The 16th FCI Symposium “Future of Clinical Decision Making”
Atarsaikhan, G. (Poster Presentation)
26 Sept 2024 → 27 Sept 2024Activity: Participating in or organising an event types › Organisation and participation in conferences, workshops, courses, seminars
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iCAN retreat 2024
Kremneva, E. (Chair of organizing committee), Kolikova, Y. (Member of organizing committee), Laakkonen, P. (Member of organizing committee), Vanharanta, S. (Member of organizing committee), Varjosalo, M. (Member of organizing committee), Wahl, H. (Member of organizing committee), Sankkila-Forsström, S. S. (Member of organizing committee), Duàn, H. (Speaker: Presenter), Karhemo, P.-R. (Speaker: Presenter), Miihkinen, M. S. (Speaker: Presenter), Liljeström, M. (Member of organizing committee), Pietiäinen, V. (Speaker: Presenter), Ganesan, A. (Poster Presentation), Saad, J. (Poster Presentation), Holmström, S. (Poster Presentation), Brodkin, J. H. (Poster Presentation), Mendoza Ortiz, E. D. (Poster Presentation), Sundaresan, S. (Poster Presentation), Chiaro, J. (Poster Presentation), Giannoula, Y. (Poster Presentation), Portaankorva, A. M. (Speaker: Presenter), Mustjoki, S. (Speaker: Presenter), Mäkelä, T. (Speaker: Presenter), Atarsaikhan, G. (Poster Presentation), Filppu, P. (Poster Presentation), Russo, S. (Poster Presentation), Pikkusaari, S. K. (Poster Presentation), Ryzhenkov, A. (Poster Presentation), Newman, R. G. D. (Speaker: Presenter), Arffman, M. E. (Speaker: Presenter), Kumari, R. (Poster Presentation), Leppiniemi, S. A. (Poster Presentation), Sanjaya, P. (Poster Presentation), Feodoroff, M. J. (Poster Presentation), Karabayev, D. (Poster Presentation), Jäntti, J. M. (Poster Presentation), Wong Ramirez, J. R. C. (Poster Presentation), Kalander, K. O. (Poster Presentation), Bouhlal, J. O. V. (Speaker: Presenter), Kuusela, S. (Speaker: Presenter), Fey, E. (Speaker: Presenter), Krami Senhaji, O. (Poster Presentation), Moradi, N. (Poster Presentation), Polso, M. M. M. (Poster Presentation), Antignani, G. (Poster Presentation), Maljanen, K. J. (Poster Presentation), Langohr, L. (Poster Presentation), Anil, A. (Poster Presentation), Smolander, P. J. (Poster Presentation), Feodoroff, M. J. (Poster Presentation), Alsaed, B. (Poster Presentation), Mogollon Figueroa, I. (Poster Presentation), Ryzhenkov, A. (Poster Presentation) & Henriksson, M. E. J. (Poster Presentation)
3 Oct 2024Activity: Participating in or organising an event types › Organisation and participation in conferences, workshops, courses, seminars
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AI-Driven Deep Image-Based Profiling of Pan-Cancer Tumor Microenvironment
Atarsaikhan, G. (Speaker)
12 Sept 2023Activity: Talk or presentation types › Oral presentation