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Heikki Mannila

19942015

Research output per year

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Publications

2015

On the Applicability of Latent Variable Modeling to Research System Data

Bingham, E. E. & Mannila, H. O., 2015, Advances in Independent Component Analysis and Learning Machines. Bingham, E., Kaski, S., Laaksonen, J. & Lampinen, J. (eds.). London: Elsevier Academic Press, p. 279-288 10 p.

Research output: Chapter in Book/Report/Conference proceedingChapterScientific

2014

Towards computational techniques for identifying candidate chronofaunas

Bingham, E. E. & Mannila, H., 2014, In : Annales Zoologici Fennici. 51, 1-2, p. 43-48 6 p.

Research output: Contribution to journalArticleScientificpeer-review

2012

Convergence in the distribution patterns of Europe's plants and mammals is due to environmental forcing

Heikinheimo, H., Eronen, J. T., Sennikov, A., Preston, C. D., Oikarinen, E., Uotila, P., Mannila, H. & Fortelius, M., 1 Sep 2012, In : Journal of Biogeography. 39, 9, p. 1633-1644 12 p.

Research output: Contribution to journalArticleScientificpeer-review

Early Environment and Neurobehavioral Development Predict Adult Temperament Clusters

Congdon, E., Service, S., Wessman, J., Seppanen, J. K., Schönauer, S., Miettunen, J., Turunen, H., Koiranen, M., Joukamaa, M., Jarvelin, M-R., Palotie, L., Veijola, J., Mannila, H., Paunio, T. & Freimer, N. B., 2012, In : PLoS One. 7, 7 , p. Article Number: e38065 9 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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Temperament Clusters in a Normal Population: Implications for Health and Disease

Wessman, J., Schönauer, S., Miettunen, J., Turunen, H., Parviainen, P., Seppänen, J. K., Congdon, E., Service, S., Koiranen, M., Ekelund, J., Laitinen, J., Taanila, A., Tammelin, T., Hintsanen, M., Pulkki-Raback, L., Keltikangas-Jarvinen, L., Viikari, J., Raitakari, O. T., Joukamaa, M., Jarvelin, M-R. & 5 others, Freimer, N., Palotie, L., Veijola, J., Mannila, H. & Paunio, T., 2012, In : PLoS One. 7, 7, p. Article Number: e33088 11 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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2011

Analyzing Word Frequencies in Large Text Corpora Using Inter-arrival Times and Bootstrapping

Lijffijt, J., Papapetrou, P., Puolamäki, K. & Mannila, H., 2011, MACHINE LEARNING AND KNOWLEDGE DISCOVERY IN DATABASES, PT II. Gunopulos, D., Hofmann, T., Malerba, D. & Vazirgiannis, M. (eds.). Springer-Verlag, p. 341-357 17 p. (Lecture Notes in Artificial Intelligence; vol. 6912).

Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

Correlations and co-occurrences of taxa: the role of temporal, geographic, and taxonomic restrictions

Kallio, A., Puolamaki, K., Fortelius, M. & Mannila, H., 2011, In : Palaeontologia Electronica. 14, 1, p. 4A 14 p.

Research output: Contribution to journalArticleScientificpeer-review

Permutation Structure in 0-1 Data

Mannila, H., 2011, MACHINE LEARNING AND KNOWLEDGE DISCOVERY IN DATABASES, PT I. Gunopulos, D., Hofmann, T., Malerba, D. & Vazirgiannis, M. (eds.). Springer-Verlag, p. 7-7 1 p. (Lecture Notes in Artificial Intelligence; vol. 6911).

Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

The effect of scale, climate and environment on species richness and spatial distribution of Finnish birds.

Eronen, J. T., Puolamäki, K., Heikinheimo, H., Lokki, H., Venäläinen, A., Mannila, H. & Fortelius, M., 2011, In : Annales Zoologici Fennici. 48, 5, p. 257-274 18 p.

Research output: Contribution to journalArticleScientificpeer-review

2010

Algorithms and Applications: Essays Dedicated to Esko Ukkonen on the Occasion of His 60th Birthday

Elomaa, T. (ed.), Mannila, H. (ed.) & Orponen, P. (ed.), 2010, Berlin Heidelberg New York: Springer-Verlag. (Lecture Notes in Computer Science; vol. 6060)

Research output: Book/ReportAnthology or special issueScientificpeer-review

Autumn temperature and carbon balance of a boreal Scots pine forest in Southern Finland

Vesala, T., Launiainen, S., Kolari, P., Pumpanen, J., Sevanto, S., Hari, P., Nikinmaa, E., Kaski, P., Mannila, H., Ukkonen, E., Piao, S. L. & Ciais, P., 2010, In : Biogeosciences. 7, 1, p. 163-176 14 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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Evaluation of BIC and cross validation for model selection on sequence segmentations

Haiminen, N. S. & Mannila, H., 2010, In : International Journal of Data Mining and Bioinformatics. 4, 6, p. 675-700 26 p.

Research output: Contribution to journalArticleScientificpeer-review

Gaussian Clusters and Noise: An Approach Based on the Minimum Description Length Principle

Luosto, P., Kivinen, J. & Mannila, H., 2010, Discovery Science: 13th International Conference, DS 2010, Canberra, Australia, October 6-8, 2010. Proceedings. Pfahringer, B., Holmes, G. & Hoffmann, A. (eds.). Berlin Heidelberg: Springer, p. 251-265 15 p. (Lecture Notes in Computer Science; vol. 6332).

Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

2009

Approximating the Minimum Chain Completion problem

Feder, T., Mannila, H. & Terzi, E., 16 Aug 2009, In : Information Processing Letters. 109, 17, p. 980-985 6 p.

Research output: Contribution to journalArticleScientificpeer-review

A randomized approximation algorithm for computing bucket orders

Ukkonen, A., Puolamaki, K., Gionis, A. & Mannila, H., 16 Mar 2009, In : Information Processing Letters. 109, 7, p. 356-359 4 p.

Research output: Contribution to journalArticleScientificpeer-review

Complexity control in a mixture model by the Hardy-Weinberg equilibrium

Bingham, E. & Mannila, H., 2009, In : Computational Statistics & Data Analysis. 53, 5, p. 1711-1719 9 p.

Research output: Contribution to journalArticleScientificpeer-review

Determining Attributes to Maximize Visibility of Objects

Miah, M., Das, G., Hristidis, V. & Mannila, H., Jul 2009, In : IEEE Transactions on Knowledge and Data Engineering. 21, 7, p. 959-973 15 p.

Research output: Contribution to journalArticleScientificpeer-review

Lower Extinction Risk in Sleep-or-Hide Mammals

Liow, L. H., Fortelius, M., Lintulaakso, K., Mannila, H. & Stenseth, N. C., 2009, In : American Naturalist. 173, 2, p. 264-272 9 p.

Research output: Contribution to journalArticleScientificpeer-review

Mixture model clustering of phenotype features reveals evidence for association of DTNBP1 to a specific subtype of schizophrenia

Wessman, J., Paunio, T., Tuulio-Henriksson, A., Koivisto, M., Partonen, T., Suvisaari, J., Turunen, J. A., Wedenoja, J., Hennah, W., Pietiläinen, O., Lönnqvist, J., Mannila, H. & Peltonen, L., 2009, In : Biological Psychiatry. 66, 11, p. 990-996 7 p.

Research output: Contribution to journalArticleScientificpeer-review

Randomization methods for assessing data analysis results on real-valued matrices

Ojala, M., Vuokko, N., Kallio, A., Haiminen, N. & Mannila, H., 2009, In : Statistical analysis and data mining. 2, 4, p. 209-230 22 p.

Research output: Contribution to journalArticleScientificpeer-review

Tell Me Something I Don't Know: Randomization Strategies for Iterative Data Mining

Hanhijarvi, S., Ojala, M., Vuokko, N., Puolamäki, K., Tatti, N. & Mannila, H., 2009, Proceedings of the 15th ACM SIGKDD international conference on Knowledge discovery and data mining . New York: ASSOC COMPUTING MACHINERY, p. 379-387 9 p.

Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

2008

Banded structure in binary matrices

Garriga, G. C., Junttila, E. & Mannila, H., 2008, KDD 08. p. 292-300 9 p.

Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

Clusterings should not be compared by visual inspection: response to Gagne & Proulx

Heikinheimo, H., Fortelius, M., Eronen, J. & Mannila, H., 2008, In : Journal of Biogeography. 36, 3, p. 563-565 3 p.

Research output: Contribution to journalArticleScientificpeer-review

Determining significance of pairwise co-occurrences of events in bursty sequences

Haiminen, N., Mannila, H. & Terzi, E., 2008, In : BMC Bioinformatics. 9, 336, 10 s

Research output: Contribution to journalArticleScientificpeer-review

Finding subgroups having several descriptions: algorithms for redescription mining

Gallo, A., Miettinen, P. & Mannila, H., 2008, Proceedings of the Eighth SIAM International Conference on Data Mining, April 24-26, 2008, Atlanta, Georgia. p. 334-345 12 p.

Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

Higher origination and extinction rates in larger mammals

Liow, L. H., Fortelius, M., Bingham, E., Lintulaakso, K., Mannila, H., Flynn, L. & Stenseth, N. C., 2008, In : Proceedings of the National Academy of Sciences of the United States of America. 105, 16, p. 6097-6102 6 p.

Research output: Contribution to journalArticleScientificpeer-review

Optimal segmentation using tree models

Gwadera, R., Gionis, A. & Mannila, H., 2008, In : Knowledge and Information Systems. 15, 3, p. 259-283 25 p.

Research output: Contribution to journalArticleScientificpeer-review

Phasing genotypes using a hidden Markov model

Rastas, P., Koivisto, M., Mannila, H. & Ukkonen, E., 2008, Bioinformatics algorithms. Hoboken, N.J: Wiley-Interscience, p. 355-372 18 p.

Research output: Chapter in Book/Report/Conference proceedingChapterScientificpeer-review

Randomization of real-valued matrices for assessing the significance of data mining results

Ojala, M., Vuokko, N., Kallio, A., Haiminen, N. & Mannila, H., 2008, Proceedings of the Eighth SIAM International Conference on Data Mining, April 24-26, 2008, Atlanta, Georgia. p. 494-505 12 p.

Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

Reply to Vilar et al: Sleep or hide, better for survival anytime

Liow, L. H., Fortelius, M., Bingham, E., Lintulaakso, K., Mannila, H., Flynn, L. & Stenseth, N. C., 2008, In : Proceedings of the National Academy of Sciences of the United States of America. 105, 35, p. E57

Research output: Contribution to journalArticleScientificpeer-review

The discrete basis problem

Miettinen, P., Mielikäinen, T., Gionis, A., Das, G. & Mannila, H., 2008, In : IEEE Transactions on Knowledge and Data Engineering. 20, 10, p. 1348-1362 15 p.

Research output: Contribution to journalArticleScientificpeer-review

2007

Assessing data mining results via swap randomization

Gionis, A., Mannila, H., Mielikäinen, T. J. & Tsaparas, P., 2007, In : ACM Transactions on Knowledge Discovery from Data. 1, 3

Research output: Contribution to journalArticleScientificpeer-review

Biogeography of European land mammals shows environmentally distinct and spatially coherent clusters

Heikinheimo, H., Fortelius, M., Eronen, J. T. & Mannila, H., 2007, In : Journal of Biogeography. 34, 6, p. 1053-1064 12 p.

Research output: Contribution to journalArticleScientificpeer-review

Clustering aggregation

Gionis, A., Mannila, H. & Tsaparas, P., 2007, In : ACM Transactions on Knowledge Discovery from Data. 1, 1

Research output: Contribution to journalArticleScientificpeer-review

Comparing segmentations by applying randomization techniques

Haiminen, N., Mannila, H. & Terzi, E., 2007, In : BMC Bioinformatics. 171, 8, 8 s

Research output: Contribution to journalArticleScientificpeer-review

Constrained hidden Markov models for population-based haplotyping

Landwehr, N., Mielikäinen, T., Eronen, L., Toivonen, H. & Mannila, H., 2007, In : BMC Bioinformatics. 8, 2, 9 s

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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Discovering isochores by least-squares optimal segmentation

Haiminen, N. & Mannila, H., 2007, In : Gene. 394, p. 53-60 8 p.

Research output: Contribution to journalArticleScientificpeer-review

Recurrent predictive models for sequence segmentation

Hyvönen, S., Gionis, A. & Mannila, H., 2007, ADVANCES IN INTELLIGENT DATA ANALYSIS VII, PROCEEDINGS. Berthold, MR., ShaweTaylor, J. & Lavrac, N. (eds.). p. 195-206 12 p. (LECTURE NOTES IN COMPUTER SCIENCE; vol. 4723).

Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

2006

Assessing data mining results via swap randomization

Gionis, A., Mannila, H., Mielikäinen, T. & Tsaparas, P., 2006, KDD-2006. p. 167-176 10 p.

Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

Constrained Hidden Markov Models for population-based haplotyping

Landwehr, N., Mielikäinen, T., Eronen, L., Toivonen, H. & Mannila, H., 2006, Probabilistic modeling and machine learning in structural and systems biology. Helsinki: Helsinki University Printing House, p. 38-43 6 p.

Research output: Chapter in Book/Report/Conference proceedingChapterScientificpeer-review

Optimal segmentation using tree models

Gwadera, R., Gionis, A. & Mannila, H., 2006, ICDM 2006: Sixth International Conference on Data Mining, Proceedings. Clifton, CW., Zhong, N., Liu, JM., Wah, BW. & Wu, XD. (eds.). Los Alamitos: IEEE Computer Society, p. 244-253 10 p. (IEEE International Conference on Data Mining).

Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

Segmentation and dimensionality reduction

Bingham, E., Gionis, A., Haiminen, N., Hiisilä, H., Mannila, H. & Terzi, E., 2006, Proceedings of the Sixth SIAM International Conference on Data Mining. p. 372-383 12 p.

Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

The discrete basis problem

Miettinen, P., Mielikäinen, T., Gionis, A., Das, G. & Mannila, H., 2006, Knowledge discovery in databases. p. 335-346 12 p.

Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

What is the dimension of your binary data?

Tatti, N., Mielikäinen, T., Gionis, A. & Mannila, H., 2006, Sixth International Conference on Data Mining (ICDM'06). IEEE, p. 603-612 10 p.

Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

2005

A hidden Markov technique for haplotype reconstruction

Rastas, P., Koivisto, M., Mannila, H. & Ukkonen, E., 2005, Algorithms in Bioinformatics (WABI-2005). Springer-Verlag, p. 140-151 12 p. (Lecture Notes in Computer Science; vol. 3692).

Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

A look at aerosol formation using data mining techniques

Hyvönen, S., Junninen, H., Laakso, L., Dal Maso, M., Grönholm, T., Bonn, B., Keronen, P., Aalto, P., Hiltunen, V., Pohja, T., Launiainen, S., Hari, P., Mannila, H. & Kulmala, M., 2005, In : Atmospheric Chemistry and Physics. 5, p. 3345-3356 12 p.

Research output: Contribution to journalArticleScientificpeer-review

Clustering aggregation

Gionis, A., Mannila, H. & Tsaparas, P., 2005, The 21st International Conference on Data Engineering (ICDE 2005) April 5-8, 2005 National Center of Sciences, Tokyo, Japan.

Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

Finding partial orders from unordered 0-1 data

Ukkonen, A., Fortelius, M. & Mannila, H., 2005, KDD-2005. p. 285-293 9 p.

Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

Method for gene mapping from chromosome and phenotype data

Toivonen, H., Onkamo, P., Vasko, K., Ollikainen, V. V., Sevon, P., Mannila, H. & Kere, J., 21 Jun 2005, USA, Patent No. 6909971, 20 May 2010

Research output: Patent