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Heikki Mannila

19942015

Research output per year

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Publications

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2014

Towards computational techniques for identifying candidate chronofaunas

Bingham, E. E. & Mannila, H., 2014, In : Annales Zoologici Fennici. 51, 1-2, p. 43-48 6 p.

Research output: Contribution to journalArticleScientificpeer-review

2012

Convergence in the distribution patterns of Europe's plants and mammals is due to environmental forcing

Heikinheimo, H., Eronen, J. T., Sennikov, A., Preston, C. D., Oikarinen, E., Uotila, P., Mannila, H. & Fortelius, M., 1 Sep 2012, In : Journal of Biogeography. 39, 9, p. 1633-1644 12 p.

Research output: Contribution to journalArticleScientificpeer-review

Early Environment and Neurobehavioral Development Predict Adult Temperament Clusters

Congdon, E., Service, S., Wessman, J., Seppanen, J. K., Schönauer, S., Miettunen, J., Turunen, H., Koiranen, M., Joukamaa, M., Jarvelin, M-R., Palotie, L., Veijola, J., Mannila, H., Paunio, T. & Freimer, N. B., 2012, In : PLoS One. 7, 7 , p. Article Number: e38065 9 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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Temperament Clusters in a Normal Population: Implications for Health and Disease

Wessman, J., Schönauer, S., Miettunen, J., Turunen, H., Parviainen, P., Seppänen, J. K., Congdon, E., Service, S., Koiranen, M., Ekelund, J., Laitinen, J., Taanila, A., Tammelin, T., Hintsanen, M., Pulkki-Raback, L., Keltikangas-Jarvinen, L., Viikari, J., Raitakari, O. T., Joukamaa, M., Jarvelin, M-R. & 5 others, Freimer, N., Palotie, L., Veijola, J., Mannila, H. & Paunio, T., 2012, In : PLoS One. 7, 7, p. Article Number: e33088 11 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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2011

Correlations and co-occurrences of taxa: the role of temporal, geographic, and taxonomic restrictions

Kallio, A., Puolamaki, K., Fortelius, M. & Mannila, H., 2011, In : Palaeontologia Electronica. 14, 1, p. 4A 14 p.

Research output: Contribution to journalArticleScientificpeer-review

The effect of scale, climate and environment on species richness and spatial distribution of Finnish birds.

Eronen, J. T., Puolamäki, K., Heikinheimo, H., Lokki, H., Venäläinen, A., Mannila, H. & Fortelius, M., 2011, In : Annales Zoologici Fennici. 48, 5, p. 257-274 18 p.

Research output: Contribution to journalArticleScientificpeer-review

2010

Autumn temperature and carbon balance of a boreal Scots pine forest in Southern Finland

Vesala, T., Launiainen, S., Kolari, P., Pumpanen, J., Sevanto, S., Hari, P., Nikinmaa, E., Kaski, P., Mannila, H., Ukkonen, E., Piao, S. L. & Ciais, P., 2010, In : Biogeosciences. 7, 1, p. 163-176 14 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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Evaluation of BIC and cross validation for model selection on sequence segmentations

Haiminen, N. S. & Mannila, H., 2010, In : International Journal of Data Mining and Bioinformatics. 4, 6, p. 675-700 26 p.

Research output: Contribution to journalArticleScientificpeer-review

2009

Approximating the Minimum Chain Completion problem

Feder, T., Mannila, H. & Terzi, E., 16 Aug 2009, In : Information Processing Letters. 109, 17, p. 980-985 6 p.

Research output: Contribution to journalArticleScientificpeer-review

A randomized approximation algorithm for computing bucket orders

Ukkonen, A., Puolamaki, K., Gionis, A. & Mannila, H., 16 Mar 2009, In : Information Processing Letters. 109, 7, p. 356-359 4 p.

Research output: Contribution to journalArticleScientificpeer-review

Complexity control in a mixture model by the Hardy-Weinberg equilibrium

Bingham, E. & Mannila, H., 2009, In : Computational Statistics & Data Analysis. 53, 5, p. 1711-1719 9 p.

Research output: Contribution to journalArticleScientificpeer-review

Determining Attributes to Maximize Visibility of Objects

Miah, M., Das, G., Hristidis, V. & Mannila, H., Jul 2009, In : IEEE Transactions on Knowledge and Data Engineering. 21, 7, p. 959-973 15 p.

Research output: Contribution to journalArticleScientificpeer-review

Lower Extinction Risk in Sleep-or-Hide Mammals

Liow, L. H., Fortelius, M., Lintulaakso, K., Mannila, H. & Stenseth, N. C., 2009, In : American Naturalist. 173, 2, p. 264-272 9 p.

Research output: Contribution to journalArticleScientificpeer-review

Mixture model clustering of phenotype features reveals evidence for association of DTNBP1 to a specific subtype of schizophrenia

Wessman, J., Paunio, T., Tuulio-Henriksson, A., Koivisto, M., Partonen, T., Suvisaari, J., Turunen, J. A., Wedenoja, J., Hennah, W., Pietiläinen, O., Lönnqvist, J., Mannila, H. & Peltonen, L., 2009, In : Biological Psychiatry. 66, 11, p. 990-996 7 p.

Research output: Contribution to journalArticleScientificpeer-review

Randomization methods for assessing data analysis results on real-valued matrices

Ojala, M., Vuokko, N., Kallio, A., Haiminen, N. & Mannila, H., 2009, In : Statistical analysis and data mining. 2, 4, p. 209-230 22 p.

Research output: Contribution to journalArticleScientificpeer-review

2008

Clusterings should not be compared by visual inspection: response to Gagne & Proulx

Heikinheimo, H., Fortelius, M., Eronen, J. & Mannila, H., 2008, In : Journal of Biogeography. 36, 3, p. 563-565 3 p.

Research output: Contribution to journalArticleScientificpeer-review

Determining significance of pairwise co-occurrences of events in bursty sequences

Haiminen, N., Mannila, H. & Terzi, E., 2008, In : BMC Bioinformatics. 9, 336, 10 s

Research output: Contribution to journalArticleScientificpeer-review

Higher origination and extinction rates in larger mammals

Liow, L. H., Fortelius, M., Bingham, E., Lintulaakso, K., Mannila, H., Flynn, L. & Stenseth, N. C., 2008, In : Proceedings of the National Academy of Sciences of the United States of America. 105, 16, p. 6097-6102 6 p.

Research output: Contribution to journalArticleScientificpeer-review

Optimal segmentation using tree models

Gwadera, R., Gionis, A. & Mannila, H., 2008, In : Knowledge and Information Systems. 15, 3, p. 259-283 25 p.

Research output: Contribution to journalArticleScientificpeer-review

Reply to Vilar et al: Sleep or hide, better for survival anytime

Liow, L. H., Fortelius, M., Bingham, E., Lintulaakso, K., Mannila, H., Flynn, L. & Stenseth, N. C., 2008, In : Proceedings of the National Academy of Sciences of the United States of America. 105, 35, p. E57

Research output: Contribution to journalArticleScientificpeer-review

The discrete basis problem

Miettinen, P., Mielikäinen, T., Gionis, A., Das, G. & Mannila, H., 2008, In : IEEE Transactions on Knowledge and Data Engineering. 20, 10, p. 1348-1362 15 p.

Research output: Contribution to journalArticleScientificpeer-review

2007

Assessing data mining results via swap randomization

Gionis, A., Mannila, H., Mielikäinen, T. J. & Tsaparas, P., 2007, In : ACM Transactions on Knowledge Discovery from Data. 1, 3

Research output: Contribution to journalArticleScientificpeer-review

Biogeography of European land mammals shows environmentally distinct and spatially coherent clusters

Heikinheimo, H., Fortelius, M., Eronen, J. T. & Mannila, H., 2007, In : Journal of Biogeography. 34, 6, p. 1053-1064 12 p.

Research output: Contribution to journalArticleScientificpeer-review

Clustering aggregation

Gionis, A., Mannila, H. & Tsaparas, P., 2007, In : ACM Transactions on Knowledge Discovery from Data. 1, 1

Research output: Contribution to journalArticleScientificpeer-review

Comparing segmentations by applying randomization techniques

Haiminen, N., Mannila, H. & Terzi, E., 2007, In : BMC Bioinformatics. 171, 8, 8 s

Research output: Contribution to journalArticleScientificpeer-review

Constrained hidden Markov models for population-based haplotyping

Landwehr, N., Mielikäinen, T., Eronen, L., Toivonen, H. & Mannila, H., 2007, In : BMC Bioinformatics. 8, 2, 9 s

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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Discovering isochores by least-squares optimal segmentation

Haiminen, N. & Mannila, H., 2007, In : Gene. 394, p. 53-60 8 p.

Research output: Contribution to journalArticleScientificpeer-review

2005

A look at aerosol formation using data mining techniques

Hyvönen, S., Junninen, H., Laakso, L., Dal Maso, M., Grönholm, T., Bonn, B., Keronen, P., Aalto, P., Hiltunen, V., Pohja, T., Launiainen, S., Hari, P., Mannila, H. & Kulmala, M., 2005, In : Atmospheric Chemistry and Physics. 5, p. 3345-3356 12 p.

Research output: Contribution to journalArticleScientificpeer-review

Using Markov chain Monte Carlo and dynamic programming for event sequence data

Salmenkivi, M. & Mannila, H., 2005, In : Knowledge and Information Systems. 7, 3, p. 267-288 22 p.

Research output: Contribution to journalArticleScientificpeer-review

2003

Discovering all most specific sentences

Gunopulos, D., Khardon, R., Mannila, H., Saluja, S., Toivonen, H. & Sharma, R. S., 2003, In : ACM Transactions on Database Systems. 28, p. 140-174 35 p.

Research output: Contribution to journalArticleScientificpeer-review

Louhi ja naistenmaa: Kalevalaisten runojen Pohjolan sijainti peruskartan nimistön valossa

Pulkkinen, R. H., Salmenkivi, M., Leino, A. & Mannila, H., 2003, In : Sananjalka (Turku). 45, p. 67–78

Research output: Contribution to journalArticleScientificpeer-review

2002

Association analysis for quantitative traits by data mining: QHPM

Onkamo, P., Ollikainen, V., Sevon, P., Toivonen, H. T. T., Mannila, H. & Kere, J., 2002, In : Annals of Human Genetics. 2002, 66, p. 419-429 11 p.

Research output: Contribution to journalArticleScientificpeer-review

Genome segmentation using piecewise constant intensity models and reversible jump MCMC

Salmenkivi, M., Kere, J. & Mannila, H., 2002, In : Bioinformatics Trends. 2002, 18, p. S211-S218 8 p.

Research output: Contribution to journalArticleScientificpeer-review

Investigatory and analytical approaches to differential gene expression profiling in mantle cell lymphoma

Zhu, Y., Hollmen, J., Raty, R., Aalto, Y., Nagy, B., Elonen, E., Kere, J., Mannila, H., Franssila, K. & Knuutila, S., 2002, In : British Journal of Haematology. 2002, 119, p. 905-915 11 p.

Research output: Contribution to journalArticleScientificpeer-review

Long-range control of expression in yeast

Mannila, H., Patrikainen, A., Seppanen, J. K. & Kere, J., 2002, In : Bioinformatics Trends. 2002, 18, p. 482-483 2 p.

Research output: Contribution to journalArticleScientificpeer-review

2001

Association analysis by data mining tools

Onkamo, P., Sevon, P., Ollikainen, V., Toivonen, H. TT., Mannila, H. & Kere, J., Oct 2001, In : American Journal of Human Genetics. 69, 4, Suppl. 1, p. 1320 1 p.

Research output: Contribution to journalArticleScientificpeer-review

Mining associations between genetic markers, phenotypes, and covariates

Sevon, P., Ollikainen, V., Onkamo, P., Toivonen, H. T. T., Mannila, H. & Kere, J., 2001, In : Genetic Epidemiology. 2001, 21, p. S588-S593 6 p.

Research output: Contribution to journalArticleScientificpeer-review

2000

Association study of the chromosomal region containing the FCER2 gene suggests it has a regulatory role in atopic disorders

Laitinen, T., Ollikainen, V., Lazaro, C., Kauppi, P., de Cid, R., Anto, J. M., Estivill, X., Lokki, H., Mannila, H., Laitinen, L. A. & Kere, J., 2000, In : American Journal of Respiratory and Critical Care Medicine. 2000, 161, p. 700-706 7 p.

Research output: Contribution to journalArticleScientificpeer-review

Data mining applied to linkage disequilibrium mapping

Toivonen, H. T. T., Onkamo, P., Vasko, K., Ollikainen, V., Sevon, P., Mannila, H., Herr, M. & Kere, J., 2000, In : American Journal of Human Genetics. 2000, 67, p. 133-145 13 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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The IL9R region contribution in asthma is supported by genetic association in an isolated population

Kauppi, P., Laitinen, T., Ollikainen, V., Mannila, H., Laitinen, L. A. & Kere, J., 2000, In : European Journal of Human Genetics. 2000, 8, p. 788-792 5 p.

Research output: Contribution to journalArticleScientificpeer-review

1999

A genomewide screen for schizophrenia genes in an isolated Finnish subpopulation, suggesting multiple susceptibility loci

Hovatta, I., Varilo, T., Suvisaari, J., Terwilliger, J. D., Ollikainen, V., Arajarvi, R., Juvonen, H., Kokko-Sahin, M. L., Vaisanen, L., Mannila, H., Lonnqvist, J. & Palotie, L., 1999, In : American Journal of Human Genetics. 65, p. 1114-1124 11 p.

Research output: Contribution to journalArticleScientificpeer-review

Interactive exploration of interesting findings in the Telecommunication Network Alarm Sequence Analyzer TASA

Klemettinen, M., Mannila, H. & Toivonen, H., Jun 1999, In : Information and Software Technology. 41, 9, p. 557-567 11 p.

Research output: Contribution to journalArticleScientificpeer-review

Rule Discovery in Telecommunication Alarm Data

Klemettinen, M., Mannila, H. & Toivonen, H., Dec 1999, In : Journal of Network and Systems Management. 7, 4, p. 395 - 423

Research output: Contribution to journalArticleScientificpeer-review

Specifying and Simulating Complex Models Using Bassist

Toivonen, H., Mannila, H., Salmenkivi, M. & Laakso, K-P., 1999, In : Real Academia Gallega de Ciencias. Revista. 93, 3, p. 375-380 6 p.

Research output: Contribution to journalArticleScientificpeer-review

1997

Discovery of Frequent Episodes in Event Sequences

Mannila, H., Toivonen, H. & Verkamo, A. I., Nov 1997, In : Data Mining and Knowledge Discovery. 1, 3, p. 259-289 31 p.

Research output: Contribution to journalArticleScientificpeer-review

Levelwise search and borders of theories in knowledge discovery

Mannila, H. & Toivonen, H., Nov 1997, In : Data Mining and Knowledge Discovery. 1, 3, p. 241-258 18 p.

Research output: Contribution to journalArticleScientificpeer-review