Research output per year
Research output per year
Personal profile
Fields of Science
- 3111 Biomedicine
International and National Collaboration
Publications and projects within past five years.
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Time-series sewage metagenomics distinguishes seasonal, human-derived and environmental microbial communities potentially allowing source-attributed surveillance
Becsei, A., Fuschi, A., Otani, S., Kant, R., Weinstein, I., Alba, P., Steger, J., Visontai, D., Brinch, C., de Graaf, M., Schapendonk, C. M. E., Battisti, A., De Cesare, A., Oliveri, C., Troja, F., Vapalahti, O., Pasquali, F., Banyai, K., Mako, M. & Pollner, P. & 6 others, , 30 Aug 2024, In: Nature Communications. 15, 7551, 13 p., 7551.Research output: Contribution to journal › Article › Scientific › peer-review
Open AccessFile -
Enhanced Viral Metagenomics with Lazypipe 2
Pljusnin, I., Vapalahti, O., Sironen, T., Kant, R. & Smura, T., 2023, In: Viruses (Basel). 15, 2, 13 p., 431.Research output: Contribution to journal › Article › Scientific › peer-review
Open Access -
Partial genome characterization of a novel potentially zoonotic parapoxvirus in a horse, Finland
Virtanen, J. M. E., Hautaniemi, M., Dutra, L., Pljusnin, I., Smura, T., Vapalahti, O., Sironen, T., Kant, R. & Kinnunen, P. M., 29 Sept 2023, In: Emerging Infectious Diseases. 29, 9, p. 1941-1944 4 p.Research output: Contribution to journal › Article › Scientific › peer-review
Open AccessFile -
ClusTRace, a bioinformatic pipeline for analyzing clusters in virus phylogenies
Pljusnin, I., Truong, P., Sironen, T., Vapalahti, O., Smura, T. & Kant, R., 28 May 2022, In: BMC Bioinformatics. 23, 1, 16 p., 196.Research output: Contribution to journal › Article › Scientific › peer-review
Open AccessFile -
HAVoC, a bioinformatic pipeline for reference-based consensus assembly and lineage assignment for SARS-CoV-2 sequences.
Truong, P., Pljusnin, I., Sironen, T., Vapalahti, O., Kant, R. & Smura, T., 17 Jul 2021, In: BMC Bioinformatics. 22, 1, 8 p., 373.Research output: Contribution to journal › Article › Scientific › peer-review
Open AccessFile
Projects
- 4 Active
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JAES Vapalahti 12/24 - 11/27
Vapalahti, O. (Project manager), Pljusnin, I. (Participant), Smura, T. (Participant) & Vauhkonen, H. K. (Participant)
01/12/2024 → 30/11/2027
Project: Foundations (Private Foundations, Non-Profit Foundations, Charitable Trusts)
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SELS 24-25 Ilja Weinstein
Pljusnin, I. (Project manager)
Suomen eläinlääketieteen säätiö
01/12/2024 → 31/12/2025
Project: Foundations (Private Foundations, Non-Profit Foundations, Charitable Trusts)
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DURABLE EU Vapalahti Olli 2/23-1/27
Vapalahti, O. (Project manager), Ahvenainen, E. R. (Participant), Alburkat, H. A. T. (Participant), Bogacheva, M. (Participant), Kirjalainen, L. M. (Participant), Pljusnin, I. (Participant), Smura, T. (Participant), Suomalainen, N. E. V. (Participant) & Vauhkonen, H. K. (Participant)
01/02/2023 → 31/01/2027
Project: EU4Health programme: EU4H-PJG
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Viromit ja niiden zoonoottinen potentiaali
Vapalahti, O. (Project manager), Huhtamo, E. (Participant), Kirjalainen, L. M. (Participant), Martikainen, J. K. (Participant), Olander, V. (Participant), Pljusnin, I. (Participant), Puonti, T. P. (Participant), Smura, T. (Participant), Suvanto, M. T. (Participant) & Truong, P. (Participant)
Suomen Akatemia Projektilaskutus
01/09/2022 → 31/08/2026
Project: Research Council of Finland: Academy Project
Activities
- 1 Supervision of other thesis (Master's, Licentiate)
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haracterization of species-level feline Helicobacter population using 16S MinION nanopore sequencing
Pljusnin, I. (Supervisor), Sironen, T. (Supervisor) & Kant, R. (Supervisor)
2024 → 2025Activity: Examination types › Supervision of other thesis (Master's, Licentiate)
Press/Media
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University of Helsinki researchers developed a sequence analysis pipeline for virus discovery
Pljusnin, I., Kant, R., Smura, T., Sironen, T. & Vapalahti, O.
03/12/2020
1 item of Media coverage
Press/Media: Press / Media