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  • Viikinkaari 5, Biocenter 2

    00790 Helsinki

    Finland

20002018
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Publications 2000 2018

2018

Bracketing phenogenotypic limits of mammalian hybridization

Savriama, Y., Valtonen, M., Kammonen, J. I., Rastas, P., Smolander, O-P., Lyyski, A., Häkkinen, T. J., Corfe, I. J., Gerber, S., Salazar-Ciudad, I., Paulin, L., Holm, L., Löytynoja, A., Auvinen, P. & Jernvall, J., 28 Nov 2018, In : Royal Society Open Science. 5, 11, 12 p., 180903.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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Differential tissue growth and cell adhesion alone drive early tooth morphogenesis: an ex vivo and in silico study

Marin Riera, M., Moustakas-Verho, J., Savriama, Y., Jernvall, J. T. & Salazar Ciudad, I., 2018, In : PLoS Computational Biology. 14, 2

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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Mapping Selection within Drosophila melanogaster Embryo's Anatomy

Salvador-Martinez, I., Coronado-Zamora, M., Castellano, D., Barbadilla, A. & Salazar-Ciudad, I., Jan 2018, In : Molecular Biology and Evolution. 35, 1, p. 66-79 14 p.

Research output: Contribution to journalArticleScientificpeer-review

Quantitative Morphological Variation in the Developing Drosophila Wing

Matamoro-Vidal, A., Huang, Y., Salazar-Ciudad, I., Shimmi, O. & Houle, D., Jul 2018, In : G3 - Genes genomes genetics. 8, 7, p. 2399-2409 11 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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2017

A set of simple cell processes is sufficient to model spiral cleavage

Brun-Usan, M., Marin-Riera, M., Grande, C., Truchado-Garcia, M. & Salazar-Ciudad, I., 1 Jan 2017, In : Development. 144, 1, p. 54-62 9 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access

How complexity increases in development: An analysis of the spatial-temporal dynamics of Gene expression in Ciona intestinalis

Salvador-Martinez, I. & Salazar-Ciudad, I., Apr 2017, In : Mechanisms of Development. 144, Part B, p. 113-124 12 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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Mechanical constraint from growing jaw facilitates mammalian dental diversity

Renvoise, E., Kavanagh, K. D., Lazzari, V., Häkkinen, T. J., Rice, R., Pantalacci, S., Salazar-Ciudad, I. & Jernvall, J., 29 Aug 2017, In : Proceedings of the National Academy of Sciences of the United States of America. 114, 35, p. 9403-9408 6 p.

Research output: Contribution to journalArticleScientificpeer-review

The molecular and cellular mechanisms coupling epithelial morphogenesis and developmental signalling

Toddie-Moore, D., Marin-Riera, M., Salazar-Ciudad, I. & Shimmi, O., Jul 2017, In : Mechanisms of Development. 145, p. S94-S94 1 p.

Research output: Contribution to journalMeeting AbstractResearchpeer-review

2016

Computational modeling of development by epithelia, mesenchyme and their interactions: a unified model

Marin-Riera, M., Brun-Usan, M., Zimm, R., Välikangas, T. & Salazar-Ciudad, I., 15 Jan 2016, In : Bioinformatics. 32, 2, p. 219-225 7 p.

Research output: Contribution to journalArticleScientificpeer-review

2015

How complexity increases in development: An analysis of the spatial-temporal dynamics of 1218 genes in Drosophila melanogaster

Salvador-Martinez, I. & Salazar-Ciudad, I., 15 Sep 2015, In : Developmental Biology. 405, 2, p. 328-339 12 p.

Research output: Contribution to journalArticleScientificpeer-review

Making quantitative morphological variation from basic developmental processes: Where are we? The case of the Drosophila wing

Matamoro-Vidal, A., Salazar-Ciudad, I. & Houle, D., Sep 2015, In : Developmental Dynamics. 244, 9, p. 1058-1073 16 p.

Research output: Contribution to journalReview ArticleScientificpeer-review

Patterned Anchorage to the Apical Extracellular Matrix Defines Tissue Shape in the Developing Appendages of Drosophila

Ray, R. P., Matamoro-Vidal, A., Ribeiro, P. S., Tapon, N., Houle, D., Salazar-Ciudad, I. & Thompson, B. J., 10 Aug 2015, In : Developmental Cell. 34, 3, p. 310-322 13 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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2014

On the effect of phenotypic dimensionality on adaptation and optimality

Brun-Usan, M., Marin-Riera, M. & Salazar-Ciudad, I., Dec 2014, In : Journal of Evolutionary Biology. 27, 12, p. 2614-2628 15 p.

Research output: Contribution to journalArticleScientificpeer-review

Replaying evolutionary transitions from the dental fossil record

Harjunmaa, E., Seidel, K., Hakkinen, T., Renvoise, E., Corfe, I. J., Kallonen, A., Zhang, Z-Q., Evans, A. R., Mikkola, M. L., Salazar Ciudad, I., Klein, O. D. & Jernvall, J., 7 Aug 2014, In : Nature. 512, 7512, p. 44- 16 p.

Research output: Contribution to journalArticleScientificpeer-review

The origin and loss of periodic patterning in the turtle shell

Moustakas-Verho, J. E., Zimm, R., Cebra-Thomas, J., Lempiainen, N. K., Kallonen, A., Mitchell, K. L., Hämäläinen, K., Salazar Ciudad, I., Jernvall, J. & Gilbert, S. F., Aug 2014, In : Development. 141, 15, p. 3033-3039 7 p.

Research output: Contribution to journalArticleScientificpeer-review

2013

Adaptive dynamics under development-based genotype-phenotype maps

Salazar Ciudad, I. & Marin-Riera, M., 2013, In : Nature. 497, 7449, p. 361-364 4 p.

Research output: Contribution to journalArticleScientificpeer-review

2012

Tooth patterning and evolution

Salazar Ciudad, I., 2012, In : Current Opinion in Genetics & Development. 22, 6, p. 585-592 8 p.

Research output: Contribution to journalArticleScientificpeer-review

2010

A computational model of teeth and the developmental origins of morphological variation

Salazar Ciudad, I. & Jernvall, J., 2010, In : Nature. 464, 7288, p. 583-586 6 p.

Research output: Contribution to journalArticleScientificpeer-review

2009

Looking at the origin of phenotypic variation from pattern formation gene networks

Salazar Ciudad, I., Oct 2009, In : Journal of Biosciences. 34, 4, p. 573-587 15 p.

Research output: Contribution to journalArticleScientificpeer-review

2008

Tooth Morphogenesis in vivo, in vitro, and in silico

Salazar Ciudad, I., 2008, In : Journal of Multiscale Modeling. p. 341-+ 33 p.

Research output: Contribution to journalReview ArticleScientificpeer-review

2007

Commonalities in fly embryogenesis and mammalian pituitary patterning

Veitia, R. A. & Salazar Ciudad, I., Sep 2007, In : Trends in Endocrinology and Metabolism. 18, 7, p. 261-265 5 p.

Research output: Contribution to journalReview ArticleScientificpeer-review

On the origins of morphological variation, canalization, robustness, and evolvability

Salazar Ciudad, I., Sep 2007, In : Integrative and Comparative Biology. 47, 3, p. 390-400 11 p.

Research output: Contribution to journalArticleScientificpeer-review

On the origins of morphological disparity and its diverse developmental bases

Salazar Ciudad, I., Nov 2006, In : BioEssays. 28, 11, p. 1112-1122 11 p.

Research output: Contribution to journalArticleScientificpeer-review

2004

How different types of pattern formation mechanisms affect the evolution of form and development

Jernvall, J. & Salazar Ciudad, I., 2004, In : Evolution & Development. 6, 1, p. 6-16 11 p.

Research output: Contribution to journalArticleScientificpeer-review

2003

Mechanisms of pattern formation in development and evolution

Salazar Ciudad, I., Jernvall, J. & Newman, SA., May 2003, In : Development. 130, 10, p. 2027-2037 11 p.

Research output: Contribution to journalReview ArticleScientificpeer-review

2002

A gene network model accounting for development and evolution of mammalian teeth

Salazar Ciudad, I. & Jernvall, J., 11 Jun 2002, In : Proceedings of the National Academy of Sciences of the United States of America. 99, 12, p. 8116-8120 5 p.

Research output: Contribution to journalArticleScientificpeer-review

2001

Phenotypic and dynamical transitions in model genetic networks I. Emergence of patterns and genotype-phenotype relationships

Salazar Ciudad, I., Newman, SA. & Sole, RV., 2001, In : Evolution & Development. 3, 2, p. 84-94 11 p.

Research output: Contribution to journalArticleScientificpeer-review

2000

Gene network dynamics and the evolution of development

Sole, RV., Salazar Ciudad, I. & Newman, SA., Dec 2000, In : Trends in Ecology & Evolution. 15, 12, p. 479-480 2 p.

Research output: Contribution to journalArticleScientificpeer-review

Gene networks capable of pattern formation: From induction to reaction-diffusion

Salazar Ciudad, I., Garcia-Fernandez, J. & Sole, RV., 21 Aug 2000, In : Journal of Theoretical Biology. 205, 4, p. 587-603 17 p.

Research output: Contribution to journalArticleScientificpeer-review