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Publications 1993 2019

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2019

The genome of cowpea (Vigna unguiculata [L.] Walp.)

Lonardi, S., Muñoz-Amatriaín, M., Liang, Q., Shu, S., Wanamaker, S. I., Lo, S., Tanskanen, J., Schulman, A. H., Zhu, T., Luo, M-C., Alhakami, H., Ounit, R., Hasan, A. M., Verdier, J., Roberts, P. A., Santos, J. R. P., Ndeve, A., Doležel, J., Vrána, J., Hokin, S. A. & 3 othersFarmer, A. D., Cannon, S. B. & Close, T. J., Jun 2019, In : Plant Journal. 98, 5, p. 767-782 16 p.

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2017

A chromosome conformation capture ordered sequence of the barley genome

Mascher, M., Gundlach, H., Himmelbach, A., Beier, S., Twardziok, S. O., Wicker, T., Radchuk, V., Dockter, C., Hedley, P. E., Russell, J., Bayer, M., Ramsay, L., Liu, H., Haberer, G., Zhang, X-Q., Zhang, Q., Barrero, R. A., Li, L., Taudien, S., Groth, M. & 56 othersFelder, M., Hastie, A., Simkova, H., Stankova, H., Vrana, J., Chan, S., Munoz-Amatrian, M., Ounit, R., Wanamaker, S., Bolser, D., Colmsee, C., Schmutzer, T., Aliyeva-Schnorr, L., Grasso, S., Tanskanen, J., Chailyan, A., Sampath, D., Heavens, D., Clissold, L., Cao, S., Chapman, B., Dai, F., Han, Y., Li, H., Li, X., Lin, C., McCooke, J. K., Tan, C., Wang, P., Wang, S., Yin, S., Zhou, G., Poland, J. A., Bellgard, M. I., Borisjuk, L., Houben, A., Dolezel, J., Ayling, S., Lonardi, S., Kersey, P., Lagridge, P., Muehlbauer, G. J., Clark, M. D., Caccamo, M., Schulman, A. H., Mayer, K. F. X., Platzer, M., Close, T. J., Scholz, U., Hansson, M., Zhang, G., Braumann, I., Spannagl, M., Li, C., Waugh, R. & Stein, N., 27 Apr 2017, In : Nature. 544, 7651, p. 426-+ 22 p.

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Open Access

Construction of a map-based reference genome sequence for barley, Hordeum vulgare L.

Beier, S., Himmelbach, A., Colmsee, C., Zhang, X-Q., Barrero, R. A., Zhang, Q., Li, L., Bayer, M., Bolser, D., Taudien, S., Groth, M., Felder, M., Hastie, A., Simkova, H., Stankova, H., Vrana, J., Chan, S., Munoz-Amatriain, M., Ounit, R., Wanamaker, S. & 40 othersSchmutzer, T., Aliyeva-Schnorr, L., Grasso, S., Tanskanen, J., Sampath, D., Heavens, D., Cao, S., Chapman, B., Dai, F., Han, Y., Li, H., Li, X., Lin, C., McCooke, J. K., Tan, C., Wang, S., Yin, S., Zhou, G., Poland, J. A., Bellgard, M. I., Houben, A., Dolezel, J., Ayling, S., Lonardi, S., Langridge, P., Muehlbauer, G. J., Kersey, P., Clark, M. D., Caccamo, M., Schulman, A. H., Platzer, M., Close, T. J., Hansson, M., Zhang, G., Braumann, I., Li, C., Waugh, R., Scholz, U., Stein, N. & Mascher, M., 27 Apr 2017, In : Scientific data . 4, 24 p., 170044.

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Genome sequencing and population genomic analyses provide insights into the adaptive landscape of silver birch

Salojärvi, J., Smolander, O-P., Nieminen, K., Rajaraman, S., Safronov, O., Safdari, P., Lamminmäki, A., Immanen, J., Lan, T., Tanskanen, J., Rastas, P., Amiryousefi, A., Jayaprakash, B., Kammonen, J. I., Hagqvist, R., Eswaran, G., Ahonen, V. H., Serra, J. A., Asiegbu, F. O., Barajas-Lopez, J. D. D. & 65 othersBlande, D., Blokhina, O., Blomster, T., Broholm, S., Brosche, M., Cui, F., Dardick, C., Ehonen, S. E., Elomaa, P., Escamez, S., Fagerstedt, K. V., Fujii, H., Gauthier, A., Gollan, P. J., Halimaa, P., Heino, P. I., Himanen, K., Hollender, C., Kangasjarvi, S., Kauppinen, L., Kelleher, C. T., Kontunen-Soppela, S., Koskinen, J. P., Kovalchuk, A., Karenlampi, S. O., Kärkönen, A. K., Lim, K-J., Leppälä, J., Macpherson, L., Mikola, J., Mouhu, K., Mähönen, A. P., Niinemets, U., Oksanen, E., Overmyer, K., Palva, E. T., Pazouki, L., Pennanen, V., Puhakainen, T., Poczai, P., Possen, B. J. H. M., Punkkinen, M., Rahikainen, M. M., Rousi, M., Ruonala, R., van der Schoot, C., Shapiguzov, A., Sierla, M., Sipilä, T. P., Sutela, S., Teeri, T. H., Tervahauta, A. I., Vaattovaara, A., Vahala, J., Vetchinnikova, L., Welling, A., Wrzaczek, M., Xu, E., Paulin, L. G., Schulman, A. H., Lascoux, M., Albert, V. A., Auvinen, P., Helariutta, Y. & Kangasjarvi, J., 8 May 2017, In : Nature Genetics. 49, 6, p. 904-912 12 p.

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The repetitive landscape of the 5100 Mbp barley genome

Wicker, T., Schulman, A. H., Tanskanen, J., Spannagl, M., Twardziok, S., Mascher, M., Springer, N. M., Li, Q., Waugh, R., Li, C., Zhang, G., Stein, N., Mayer, K. F. X. & Gundlach, H., 20 Dec 2017, In : Mobile DNA. 8, 22

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2014

The Glanville fritillary genome retains an ancient karyotype and reveals selective chromosomal fusions in Lepidoptera

Ahola, V., Lehtonen, R., Somervuo, P., Salmela, L., Koskinen, P., Rastas, P., Valimaki, N., Paulin, L., Kvist, J., Wahlberg, N., Tanskanen, J., Hornett, E. A., Ferguson, L. C., Luo, S., Cao, Z., de Jong, M. A., Duplouy, A., Smolander, O-P., Vogel, H., McCoy, R. C. & 27 othersQian, K., Wong, S. C., Zhang, Q., Ahmad, F., Haukka, J. K., Joshi, A., Salojarvi, J., Wheat, C. W., Grosse-Wilde, E., Hughes, D., Katainen, R., Pitkanen, E., Ylinen, J., Waterhouse, R. M., Turunen, M., Vaharautio, A., Ojanen, S. P., Schulman, A. H., Taipale, M., Lawson, D., Ukkonen, E., Makinen, V., Goldsmith, M. R., Holm, L., Auvinen, P., Frilander, M. J. & Hanski, I., Sep 2014, In : Nature Communications. 5, 9 p., 4737.

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Vernalization, gibberellic acid and photo period are important signals of yield formation in timothy (Phleum pratense)

Jokela, V., Virkajarvi, P., Tanskanen, J. & Seppanen, M. M., Sep 2014, In : Physiologia Plantarum. 152, 1, p. 152-163 12 p.

Research output: Contribution to journalArticleScientificpeer-review

2010

Genome sequencing and analysis of the model grass Brachypodium distachyon

Vogel, J. P., Garvin, D. F., Mockler, T. C., Schmutz, J., Rokhsar, D., Bevan, M. W., Barry, K., Lucas, S., Harmon-Smoth, M., Lail, K., Tice, H., Grimwood, J., McKenzie, N., Huo, N., Gu, Y. Q., Lazo, G. R., Anderson, O. D., You, F. M., Luo, M-C., Dvorak, J. & 116 othersWright, J., Febrer, M., Idziak, D., Hasterok, R., Lindquist, E., Wang, M., Fox, S. E., Priest, H. D., Filichkin, S. A., Givan, S. A., Bryant, D. W., Chang, J. H., Wu, H., Wu, W., Hsia, A-P., Schnable, P. S., Kalyanaraman, A., Baarbazuk, B., Michael, T. P., Hazen, S. P., Bragg, J. N., Laudencia-Chingcuanco, D., Weng, Y., Haberer, G., Spannagl, M., Mayer, K., Rattei, T., Mitros, T., Lee, S-J., Rose, J. K. C., Mueller, L. A., York, T. L., Wicker, T., Buchmann, J. P., Tanskanen, J., Schulman, A. H., Gundlach, H., de Oliveira, A. C., Maia, L. D. C., Belknap, W., Jiang, N., Lai, J., Zhu, L., Ma, J., Sun, C., Pritham, E., Salse, J., Murat, F., Abrouk, M., Bruggmann, R., Messing, J., Fahlgren, N., Sullivan, C. M., Carrington, J. C., Chapman, E. J., May, G. D., Zhai, J., Ganssmann, M., Gurazada, S. G. R., German, M., Meyers, B. C., Green, P. J., Tyler, L., Wu, J., Thomson, J., Chen, S., Scheller, H. V., Harholt, J., Ulvskov, P., Kimbrel, J. A., Bartley, L. E., Cao, P., Jung, K-H., Sharma, M. K., Vega-Sanchez, M., Ronald, P., Dardick, C. D., De Bodt, S., Verelst, W., Inze, D., Heese, M., Schnittger, A., Yang, X., Kalluri, U. C., Tuskan, G. A., Hua, Z., Vierstra, R. D., Cui, Y., Ouyang, S., Sun, Q., Liu, Z., Yilmaz, A., Grotewold, E., Sibout, R., Hematy, K., Mouille, G., Hoefte, H., Pelloux, J., O'Connor, D., Schbnable, J., Rowe, S., Harmon, F., Cass, C. L., Sedbrook, J. C., Byrne, M. E., Walsh, S., Higgins, J., Li, P., Brutnell, T., Unver, T., Budak, H., Belcram, H., Charles, M., Chalhoub, B., Baxter, I. & Int Brachypodium Initiative, 2010, In : Nature. 463, 7282, p. 763-768 6 p.

Research output: Contribution to journalArticleScientificpeer-review

2009

PATERNAL AGE IS ASSOCIATED WITH INCREASED MORTALITY RISK IN PSYCHOTIC DISORDERS

Miller, B. J., Pihlajamaa, J., Henriksson, M., Hannele, H., Huttunen, M., Tanskanen, A., Cannon, M., Haukka, J., Suvisaari, J. & Kirkpatrick, B., 2009, In : Schizophrenia bulletin. 35, p. 69-69 1 p.

Research output: Contribution to journalArticleScientificpeer-review

2008

Cassandra retrotransposons carry independently transcribed 5S RNA

Kalendar, R., Tanskanen, J., Chang, W., Antonius, K., Sela, H., Peleg, O. & Schulman, A. H., 2008, In : Proceedings of the National Academy of Sciences of the United States of America. 105, 15, p. 5833-5838 6 p.

Research output: Contribution to journalArticleScientificpeer-review

2007

Life without GAG: the BARE-2 retrotransposon as a parasite's parasite

Tanskanen, J. A., Sabot, F., Vicient, C. & Schulman, A. H., 2007, In : Gene. 390, p. 166-174 9 p.

Research output: Contribution to journalArticleScientificpeer-review

2006

Retrotransposons: Metaparasites and agents of genome evolution

Sabot, F., Kalendar, R., Jääskeläinen, M., Chang, W., Tanskanen, J. & Schulman, A. H., 2006, In : Israel Journal of Ecology & Evolution. 52, 3-4, p. 319-330 12 p.

Research output: Contribution to journalArticleScientificpeer-review

1999

Association between prenatal exposure to poliovirus infection and adult schizophrenia

Suvisaari, J., Haukka, J., Tanskanen, A., Hovi, T. & Lonnqvist, J., 1999, In : American Journal of Psychiatry. 156, p. 1100-1102 3 p.

Research output: Contribution to journalArticleScientificpeer-review

Retrotransposon BARE 1 and its role in genome evolution in the genus Hordeum.

Vicient, C., Suoniemi, A., Anamthawat-Jónsson, K., Tanskanen, J. A., Beharav, A., Nevo, E. & Schulman, A., 1999, In : Plant Cell. 11, p. 1769-1784

Research output: Contribution to journalArticleScientificpeer-review

1998

Age at onset and outcome in schizophrenia are related to the degree of familial loading

Suvisaari, J. M., Haukka, J., Tanskanen, A. & Lonnqvist, J. K., 1998, In : British Journal of Psychiatry. 173, p. 494-500 7 p.

Research output: Contribution to journalArticleScientificpeer-review

Gypsy-like retrotransposons are widespread in the plant kingdom.

Suoniemi, A., Tanskanen, J. A. & Schulman, A., 1998, In : Plant Journal. 13, p. 699-705

Research output: Contribution to journalArticleScientificpeer-review

The core domain of retrotransposon integrase in Hordeum: Predicted structure and evolution.

Suoniemi, A., Tanskanen, J. A., Pentikäinen, O., Johnson, M. & Schulman, A., 1998, In : Molecular Biology and Evolution. 15, p. 1135-1144

Research output: Contribution to journalArticleScientificpeer-review