Research output per year
Research output per year
Personal profile
Description of research and teaching
My research as a doctoral student was on the nitrogen-fixing symbiosis between the rhizobium Neorhizobium galegae and its host plant species Galega orientalis and Galega officinalis. Making use of molecular biology, genome sequencing and comparative genomics, I studied symbiosis-related genes important for nitrogen fixation in N. galegae strains.
During postdoc projects I have been involved in bioinformatic analyses of fungal and plant genomes. More specifically, genome and transcriptome assembly and annotation of the plant pathogen Podosphaera plantaginis; annotation of the Melitaea cinxia genome; genome and transcriptome assembly and gene co-expression network analysis of the ornamental plant Gerbera hybrida. Currently, I am working with bioinformatics in the Fungco research group led by Dr. Taina Lundell, focusing on wood-decaying forest fungi.
Fields of Science
- 11832 Microbiology and virology
- Bioinformatics
- 11831 Plant biology
International and National Collaboration
Publications and projects within past five years.
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Basidiomycota fungi and ROS: genomic perspective on key enzymes involved in generation and mitigation of reactive oxygen species
Mattila, H., Österman-Udd, J., Mali, T. & Lundell, T., 23 Mar 2022, In: Frontiers in Fungal Biology. 3Research output: Contribution to journal › Review Article › peer-review
Open AccessFile -
Improved chromosome-level genome assembly of the Glanville fritillary butterfly (Melitaea cinxia) integrating Pacific Biosciences long reads and a high-density linkage map
Smolander, O-P., Blande, D., Ahola, V., Rastas, P., Tanskanen, J., Kammonen, J., Oostra, V., Pellegrini, L., Ikonen, S., Dallas, T., DiLeo, M. F., Duplouy, A., Duru, I. C., Halimaa, P., Kahilainen, A., Kuwar, S. S., Karenlampi, S. O., Lafuente, E., Luo, S., Makkonen, J., & 13 others, 12 Jan 2022, In: GigaScience. 11, 14 p., 097.Research output: Contribution to journal › Article › Scientific › peer-review
Open AccessFile -
Genomic features separating ten strains of Neorhizobium galegae with different symbiotic phenotypes
Österman, J. M., Mousavi, S. A., Koskinen, J. P., Paulin, L. G. & Lindström, A. K., 2 May 2015, In: BMC Genomics. 16, 14 p., 348.Research output: Contribution to journal › Article › Scientific › peer-review
Open AccessFile -
Molecular factors and genetic differences defining symbiotic phenotypes of Galega spp. and Neorhizobium galegae strains
Österman, J. M., 2015, Helsinki: University of Helsinki. 60 p.Research output: Thesis › Doctoral Thesis › Collection of Articles
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Genome sequencing of two Neorhizobium galegae strains reveals a noeT gene responsible for the unusual acetylation of the nodulation factors
Österman, J. M., Marsh, J., Laine, P. K. S., Zeng, Z., Alatalo, R. M. E., Sullivan, J. T., Young, J. P. W., Thomas-Oates, J., Paulin, L. G. & Lindström, A. K., 2014, In: BMC Genomics. 15, 1471-2164, 19 p., 500.Research output: Contribution to journal › Article › Scientific › peer-review
Open AccessFile
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ForMic: Deadwood microbiomes: hidden resources in forest carbon cycling and bioconversion into natural products
Lundell, T., Hietanen, N. L. E., Kazanaviciute, A. & Österman-Udd, J.
01/09/2022 → 31/08/2026
Project: Academy of Finland: Academy Project
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Biofungi - kääpäsienten fermentaatiokyvyn ja aineenvaihdunnan reittien avaus jätteiden muuntamisessa
Lundell, T., Kiviniemi, E. A., Mattila, H., Christodoulou, M., Hurtado López, N., Kiviniemi, E. A., Laine, T. A. K., Mali, T., Mattila, H., Mikkola, A. H., Pulkkanen, R. E. & Österman-Udd, J.
01/01/2019 → 31/08/2022
Project: Foundations (Private Foundations, Non-Profit Foundations, Charitable Trusts)
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Molecular mechanisms affecting symbiotic effectiveness in rhizobium - legume symbioses
Österman-Udd, J., Lindström, K., Mousavi, S. A., Paulin, L., Alatalo, R. M. E. & Laine, P.
01/01/2010 → 31/12/2013
Project: Research project
Activities
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Next Generation Genomics 2018 Symposium & Workshop
Janina Österman-Udd (Attendee)
23 Oct 2018 → 24 Oct 2018Activity: Participating in or organising an event types › Organisation and participation in conferences, workshops, courses, seminars
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10th European Nitrogen Fixation Congress (ENFC)
Janina Österman (Poster Presentation)
2 Sep 2012 → 5 Sep 2012Activity: Participating in or organising an event types › Organisation and participation in conferences, workshops, courses, seminars
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Workshop “Genomics of Nitrogen Fixing Bacteria”
Janina Österman (Speaker: Presenter)
2 Sep 2012Activity: Participating in or organising an event types › Organisation and participation in conferences, workshops, courses, seminars
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17th International Conference on Nitrogen Fixation
Janina Österman (Poster Presentation)
27 Nov 2011 → 1 Dec 2011Activity: Participating in or organising an event types › Organisation and participation in conferences, workshops, courses, seminars
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The European Conference on Prokaryotic and Fungal Genomics
Janina Österman (Poster Presentation)
18 Sep 2011 → 21 Sep 2011Activity: Participating in or organising an event types › Organisation and participation in conferences, workshops, courses, seminars