Research output per year
Research output per year
Personal profile
Description of research and teaching
Bioinformatics, Structural bioinformatics, NGS analysis, computational methods for Cryo-EM, (Bio)Python.
Fields of Science
- 119 Other natural sciences
- Bioinformatics
International and National Collaboration
Publications and projects within past five years.
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Comprehensive metabolomic and epigenomic characterization of microsatellite stable BRAF-mutated colorectal cancer
Taira, A., Aavikko, M., Katainen, R., Kaasinen, E., Välimäki, N., Ravantti, J., Ristimäki, A., Seppälä, T. T., Renkonen-Sinisalo, L., Lepistö, A., Tahkola, K., Mattila, A., Koskensalo, S., Mecklin, J.-P., Böhm, J., Bramsen, J. B., Lindbjerg Andersen, C., Palin, K., Rajamäki, K. & Aaltonen, L. A., 19 Jun 2025, In: Oncogene. 44, 22, p. 1718-1730 13 p.Research output: Contribution to journal › Article › Scientific › peer-review
Open Access -
Genomic and structural insights into Jyvaskylavirus, the first giant virus isolated from Finland
Almeida, G. M. D. F., Arriaga, I., de Azevedo, B. L., Leppänen, M., Abrahão, J. S., Andreani, J., Zabeo, D., Ravantti, J. J., Abrescia, N. G. & Sundberg, L.-R., 25 Mar 2025, In: eLife. 13, 41 p., RP103492.Research output: Contribution to journal › Article › Scientific › peer-review
Open AccessFile -
Cancer incidence following non-neoplastic medical conditions: a prospective population-based cohort study
Sipilä, L. J., Tanskanen, T., Heikkinen, S., Seppä, K., Aavikko, M., Ravantti, J., Aaltonen, L. A. & Pitkäniemi, J., 4 Nov 2024, In: Acta oncologica (Stockholm, Sweden). 63, p. 841-849 9 p.Research output: Contribution to journal › Article › Scientific › peer-review
Open AccessFile -
Detection of a major Lynch Syndrome-causing MLH1 founder variant in a large-scale genotyped cohort
Sipilä, L. J., Aavikko, M., Ravantti, J., Martin, S., Kuopio, T., Lahtinen, L., Peltomäki, P., Mecklin, J. P., Aaltonen, L. A. & Seppälä, T. T., Jun 2024, In: Familial Cancer. 23, p. 647-652 6 p.Research output: Contribution to journal › Article › Scientific › peer-review
Open AccessFile -
Distinct functions for the paralogous RBM41 and U11/U12-65K proteins in the minor spliceosome
Norppa, A. J., Chowdhury, I., van Rooijen, L. E., Ravantti, J. J., Snel, B., Varjosalo, M. & Frilander, M. J., 18 Mar 2024, In: Nucleic Acids Research. 16 p.Research output: Contribution to journal › Article › Scientific › peer-review
Open AccessFile
Projects
- 1 Finished
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Center of Excellence in Virus Research (CoE_VIRRES)
Bamford, D. H. (Principal Investigator), Bamford, J. (Participant), Butcher, S. (Principal Investigator), Oksanen, H. M. (Principal Investigator), Poranen, M. (Principal Investigator), Roine, E. (Principal Investigator), Kainov, D. (Principal Investigator), Tuma, R. (Participant), Ravantti, J. (Participant), Huiskonen, J. (Participant), Jäälinoja, H. (Participant), Ora, A. (Participant), Hattula, K. (Participant), Ziedaite, G. (Participant), Romanovskaya, A. (Participant), Lisal, J. (Participant), Buivydas, A. (Participant), Redder, P. (Participant), Domanska, A. (Participant), Vilen, S. (Participant), Manole, V. (Participant), Happonen, L. (Participant), Seitsonen, J. (Participant), Liljeroos, L. (Participant), Suchanova, B. (Participant), Falck, S. (Participant), Daugelavicius, R. (Participant), Golubtsov, A. (Participant), Yuan, P. (Participant), Anastasina, M. (Participant), Karhu, N. J. (Participant), Koivunen, M. (Participant), Laurinavicius, S. (Participant), Wallin, A. (Participant), Aalto, A. P. (Participant), Sarin, P. (Participant), Atanasova, N. (Participant), Sun, X. (Participant), Pietilä, M. (Participant), Krupovic, M. (Participant), Cvirkaite-Krupovic, V. (Participant), Kukkaro, P. (Participant) & Pirttimaa, M. (Participant)
25/02/2011 → 31/12/2016
Project: Research Evaluation 2011
Activities
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PhD thesis Co-supervisor of Svetlana Sofieva
Ravantti, J. (Supervisor)
2019 → …Activity: Examination types › Supervisor or co-supervisor of doctoral thesis
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PhD thesis Co-supervisor of Lauri Sipilä
Ravantti, J. (Supervisor)
2017 → …Activity: Examination types › Supervisor or co-supervisor of doctoral thesis
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Reviewer of PhD thesis of Bhanupratap Singh Chouhan
Ravantti, J. (Pre-examiner)
2016Activity: Examination types › Pre-examiner of doctoral thesis
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Member of thesis committee of Linping Wang
Ravantti, J. (Member of thesis committee / follow-up group)
2015 → …Activity: Examination types › Member of doctoral thesis committee / follow-up group
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Okinawa Institute of Science and Technology (OIST)
Ravantti, J. (Visiting researcher)
23 Oct 2015 → 30 Oct 2015Activity: Visiting an external institution types › Academic visit to other institution
Press/Media
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University of Helsinki: Breakthrough in Understanding Genesis of Fibroids
Sahu, B., Berta, D. & Ravantti, J.
05/08/2021
1 item of Media coverage
Press/Media: Press / Media
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Breakthrough in understanding genesis of fibroids
Välimäki, N., Rajamäki, K., Sahu, B., Berta, D. & Ravantti, J.
05/08/2021
2 items of Media coverage
Press/Media: Press / Media
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Mathematics supports a new way to classify viruses based on structure
Bamford, D. & Ravantti, J.
22/02/2017 → 27/02/2017
2 items of Media coverage
Press/Media: Press / Media
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Researchers find new evidence to support structure-based classification system for viruses
Bamford, D. & Ravantti, J.
23/02/2017 → 24/02/2017
2 items of Media coverage
Press/Media: Press / Media
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Mathematics supports a new way to classify viruses based on structure -- ScienceDaily
Bamford, D. & Ravantti, J.
23/02/2017
1 item of Media coverage
Press/Media: Press / Media