Research output per year
Research output per year
Personal profile
Education/Academic qualification
Computer Science, Doctor of Philosophy, University of Helsinki
1 Jan 2021 → 17 Jun 2024
Award Date: 17 Jun 2024
Computer Science, Master, Eötvös Loránd University
1 Feb 2016 → 28 Feb 2018
Award Date: 28 Feb 2018
Computer Engineering, Bachelor, Islamic University of Gaza
15 Sept 2008 → 23 Jun 2013
Award Date: 23 Jun 2013
Fields of Science
- 113 Computer and information sciences
- Natural Language Processing
- Machine learning
- Deep Learning
- 1182 Biochemistry, cell and molecular biology
- Bioinformaticas, Systems biology
International and National Collaboration
Publications and projects within past five years.
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Using BERT to identify drug-target interactions from whole PubMed
Aldahdooh, J., Vähä-Koskela, M., Tang, J. & Tanoli, Z., 21 Jun 2022, In: BMC Bioinformatics. 23, 1, 13 p., 245.Research output: Contribution to journal › Article › Scientific › peer-review
Open AccessFile -
R-BERT-CNN: Drug-target interactions extraction from biomedical literature
Aldahdooh, J., Tanoli, Z. & Tang, J., 2 Nov 2021, Proceedings of the BioCreative VII Challenge Evaluation Workshop. p. 102-106 5 p.Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Scientific › peer-review
Open AccessFile -
Minimal information for chemosensitivity assays (MICHA): a next-generation pipeline to enable the FAIRification of drug screening experiments
Tanoli, Z., Aldahdooh, J., Alam, F., Wang, Y., Seemab, U., Fratelli, M., Pavlis, P., Hajduch, M., Bietrix, F., Gribbon, P., Zaliani, A., Hall, M. D., Shen, M., Brimacombe, K., Kulesskiy, E., Saarela, J., Wennerberg, K., Vähä-Koskela, M. & Tang, J., Jan 2022, In: Briefings in Bioinformatics. 23, 1, 7 p., 350.Research output: Contribution to journal › Article › Scientific › peer-review
Open AccessFile -
Building a comprehensive drug-target knowledge base using biomedical text mining
Aldahdooh, J., May 2024, Helsinki: University of Helsinki. 117 p.Research output: Thesis › Doctoral Thesis › Collection of Articles
Open Access -
Mining drug-target interactions from biomedical literature using chemical and gene descriptions-based ensemble transformer model
Aldahdooh, J., Tanoli, Z. & Tang, J., 24 Jul 2024, In: Bioinformatics advances. 4, 1, 13 p., vbae106.Research output: Contribution to journal › Article › Scientific › peer-review
Open AccessFile
Projects
- 1 Active
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iCAN - Digital precision cancer medicine for discoveries and improved treatments
Mäkelä, T. (Project manager), Adhikari, S. (Participant), Aldahdooh, J. M. F. (Participant), Ariotta, V. (Participant), Arjama, M. A. (Participant), Atarsaikhan, G. (Participant), Bao, J. (Participant), Barreiro, K. (Participant), Bhalke, M. S. (Participant), Bollepalli, S. (Participant), Brandt, J. A. J. (Participant), Chernenko, A. (Participant), Dashi, G. (Participant), Eloranta, K. (Participant), Eriksson, M. R. (Participant), Fey, E. (Participant), Gerber, L. J. (Participant), Grönholm, M. (Participant), Hannula, S. A. (Participant), Heistman, V. (Participant), Henriksson, M. E. J. (Participant), Hiitola, E. T. J. (Participant), Huttunen, A. T. (Participant), Hyyppä, S. P. P. (Participant), Högel-Starck, C. S. P. (Participant), Ianevski, A. (Participant), Ikonen, N. (Participant), Jansouz, S. (Participant), Jha, S. (Participant), Junquera Mencía, A. (Participant), Kalander, K. O. (Participant), Kalashnikov, I. (Participant), Kampanellou, E. (Participant), Karabayev, D. (Participant), Karhemo, P.-R. (Participant), Kekkonen, J. (Participant), Kolikova, Y. (Participant), Krami Senhaji, O. (Participant), Kuisma-van der Linden, M. S. (Participant), Kumari, R. (Participant), Kuosmanen, A. (Participant), Kurki, V. (Participant), Kuusela, S. (Participant), Kücükel, H. (Participant), Langohr, L. (Participant), Lavikka, K. A. (Participant), Le Joncour, V. (Participant), Lehto, T.-P. (Participant), Leivonen, S.-K. (Participant), Liljeström, M. (Participant), Lindfors, I. S. (Participant), Lindgren, H. (Participant), Luck, T. J. (Participant), Lähdeniemi, I. A. K. (Participant), Maarala, A. I. (Participant), Maljanen, K. J. (Participant), Marchi, G. (Participant), Martikainen, E. M. (Participant), Meriranta, L. (Participant), Metsäranta, N. A. C. (Participant), Miihkinen, M. S. (Participant), Nader, K. M. (Participant), Nagaraj, A. (Participant), Nguyen, M. (Participant), Niemeyer, F. (Participant), Niemiec, I. (Participant), Nylén, M. M. (Participant), Palin, K. (Participant), Palva, A. (Participant), Parsons, A. O. (Participant), Perez Villatoro, F. R. (Participant), Pietiäinen, V. (Participant), Pirinen, I. E. (Participant), Pirttikoski, A. A. (Participant), Pitko, I. M. (Participant), Polianskyte-Prause, Z. (Participant), Puhka, M. (Participant), Quintero, I. B. (Participant), Rachidi, S. E. (Participant), Rajalaakso, M. T. (Participant), Rodosthenous, R. (Participant), Saad, J. (Participant), Sanjaya, P. (Participant), Seppälä, T. T. (Participant), Seref Vujaklija, C. (Participant), Shah, S. (Participant), Sorri, S. P. (Participant), Suni, V. (Participant), Suutala, A. (Participant), Suvela, M. (Participant), Udayani, J. E. (Participant), Verkasalo, H. M. (Participant), Vilkkavaara Cancocak, Y. (Participant), Vähärautio, A. (Participant), Vänttinen, I. M. (Participant), Västrik, I. (Participant), Väänänen, J. (Participant), Wang, W. (Participant) & Zhang, X. (Participant)
Suomen Akatemia Projektilaskutus, Academy of Finland
01/09/2022 → 31/12/2026
Project: Research Council of Finland: Finnish Flagship Programme
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Computational and Structural Biotechnology Journal (Journal)
Aldahdooh, J. M. F. (Reviewer)
1 May 2023 → 31 May 2023Activity: Publication peer-review and editorial work types › Peer review of manuscripts
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R-BERT-CNN: Drug-target interactions extraction from biomedical literature
Aldahdooh, J. M. F. (Speaker)
9 Nov 2021Activity: Talk or presentation types › Oral presentation
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Using BERT to identify drug-target interactions from whole PubMed
Aldahdooh, J. M. F. (Speaker)
2 Nov 2021Activity: Talk or presentation types › Oral presentation