Photo of Jenni Hultman
  • PL 56 (Viikinkaari 9)

    00014

    Finland

20052019
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Publications 2005 2019

2019

Growth and metabolic characteristics of fastidious meat-derived Lactobacillus algidus strains

Säde, E., Johansson, P., Heinonen, T., Hultman, J. & Björkroth, J., 23 Oct 2019, In : International Journal of Food Microbiology.

Research output: Contribution to journalArticleScientificpeer-review

2018

Construction and characterization of synthetic bacterial community for experimental ecology and evolution

Cairns, J., Jokela, R., Hultman, J., Tamminen, M., Virta, M. & Hiltunen, T., 14 Aug 2018, In : Frontiers in Genetics. 9, 12 p., 312.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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Ecology determines how low antibiotic concentration impacts community composition and horizontal transfer of resistance genes

Cairns, J., Ruokolainen, L., Hultman, J., Tamminen, M., Virta, M. & Hiltunen, T., 19 Apr 2018, In : Communications Biology. 1, 8 p., 35.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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Host range of antibiotic resistance genes in wastewater treatment plant influent and effluent

Hultman, J., Tamminen, M., Pärnänen, K., Cairns, J., Karkman, A. & Virta, M., 1 Apr 2018, In : FEMS Microbiology Ecology. 94, 4, p. 1-10 10 p., fiy038.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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Maternal gut and breast milk microbiota affect infant gut antibiotic resistome and mobile genetic elements

Pärnänen, K., Karkman, A., Hultman, J., Lyra, C., Bengtsson-Palme, J., Larsson, D. G. J., Rautava, S., Isolauri, E., Salminen, S., Kumar, H., Satokari, R. & Virta, M., 24 Sep 2018, In : Nature Communications. 9, 11 p., 3891.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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2017

A communal catalogue reveals Earth's multiscale microbial diversity

Thompson, L. R., Sanders, J. G., McDonald, D., Amir, A., Ladau, J., Locey, K. J., Prill, R. J., Tripathi, A., Gibbons, S. M., Ackermann, G., Navas-Molina, J. A., Janssen, S., Kopylova, E., Vazquez-Baeza, Y., Gonzalez, A., Morton, J. T., Mirarab, S., Xu, Z. Z., Jiang, L., Haroon, M. F. & 24 others, Kanbar, J., Zhu, Q., Song, S. J., Kosciolek, T., Bokulich, N. A., Lefler, J., Brislawn, C. J., Humphrey, G., Owens, S. M., Hampton-Marcell, J., Berg-Lyons, D., McKenzie, V., Fierer, N., Fuhrman, J. A., Clauset, A., Stevens, R. L., Shade, A., Pollard, K. S., Goodwin, K. D., Jansson, J. K., Gilbert, J. A., Knight, R., Earth Microbiome Project Consortiu & Hultman, J., 23 Nov 2017, In : Nature. 551, 7681, p. 457-+ 21 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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Exploring lot-to-lot variation in spoilage bacterial communities on commercial modified atmosphere packaged beef

Säde, E. J., Penttinen, K., Björkroth, K. J. & Hultman, J. J., Apr 2017, In : Food Microbiology. 62, p. 147–152 6 p.

Research output: Contribution to journalArticleScientificpeer-review

Quantifying uncertainty of taxonomic placement in DNA barcoding and metabarcoding

Somervuo, P., Yu, D. W., Xu, C. C. Y., Ji, Y., Hultman, J., Wirta, H. & Ovaskainen, O., Apr 2017, In : Methods in Ecology and Evolution. 8, 4, p. 398-407 10 p.

Research output: Contribution to journalArticleScientificpeer-review

2016
Open Access
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Evaluating the mobility potential of antibiotic resistance genes in environmental resistomes without metagenomics

Pärnänen, K., Karkman, A., Tamminen, M., Lyra, C., Hultman, J., Paulin, L. & Virta, M., 2016, In : Scientific Reports. 6, p. 35790 9 p., 35790.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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Pintaa syvemmältä - pintojen lajikirjo paljastuu

Säde, E. & Hultman, J., 2016, In : Kehittyvä Elintarvike. 27, 1, p. 30-31 2 p.

Research output: Contribution to journalArticleProfessional

2015

Inconsistent Denoising and Clustering Algorithms for Amplicon Sequence Data

Koskinen, K., Auvinen, P., Björkroth, J. & Hultman, J., 1 Aug 2015, In : Journal of Computational Biology. 22, 8, p. 743-751 9 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access

Multi-omics of permafrost, active layer and thermokarst bog soil microbiomes

Hultman, J., Waldrop, M. P., Mackelprang, R., David, M. M., McFarland, J., Blazewicz, S. J., Harden, J., Turetsky, M. R., McGuire, A. D., Shah, M. B., VerBerkmoes, N. C., Lee, L. H., Mavrommatis, K. & Jansson, J. K., 14 May 2015, In : Nature. 521, 7551, p. 208-+ 17 p.

Research output: Contribution to journalArticleScientificpeer-review

Preparation and antimicrobial characterization of silver-containing packaging materials for meat

Kuuliala, L., Pippuri, T., Hultman, J., Auvinen, S-M., Kolppo, K., Nieminen, T., Karp, M., Björkroth, J., Kuusipalo, J. & Jääskeläinen, E., Dec 2015, In : Food Packaging and Shelf Life. 6, p. 53-60 8 p.

Research output: Contribution to journalArticleScientificpeer-review

2014

Assessments of the Deepwater Horizon oil spill impact on Gulf coast microbial communities

Lamendella, R., Strutt, S., Borglin, S., Chakraborty, R., Tas, N., Mason, O. U., Hultman, J., Prestat, E., Hazen, T. C. & Jansson, J. K., 3 Apr 2014, In : Frontiers in Microbiology. 5, 13 p., 130.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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Evaluation of Molecular Techniques in Characterization of Deep Terrestrial Biosphere

Bomberg, M., Nyyssönen, M., Nousiainen, A., Hultman, J. J., Paulin, L. G., Auvinen, P. O. V. & Itävaara, M., 2014, In : Open Journal of Ecology. p. 468-487

Research output: Contribution to journalArticleScientificpeer-review

FOAM (Functional Ontology Assignments for Metagenomes): a Hidden Markov Model (HMM) database with environmental focus

Prestat, E., David, M. M., Hultman, J., Tas, N., Lamendella, R., Dvornik, J., Mackelprang, R., Myrold, D. D., Jumpponen, A., Tringe, S. G., Holman, E., Mavromatis, K. & Jansson, J. K., 29 Oct 2014, In : Nucleic Acids Research. 42, 19, 7 p., 145.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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Taxonomically and functionally diverse microbial communities in deep crystalline rocks of the Fennoscandian shield

Nyyssonen, M., Hultman, J., Ahonen, L., Kukkonen, I., Paulin, L., Laine, P., Itävaara, M. & Auvinen, P., 2014, In : ISME Journal. 8, 1, p. 126-138 13 p.

Research output: Contribution to journalArticleScientificpeer-review

2012

Comparison of microbial communities in marinated and unmarinated broiler meat by metagenomics

Nieminen, T. T., Koskinen, K., Laine, P., Hultman, J., Säde, E., Paulin, L., Paloranta, A., Johansson, P., Björkroth, J. & Auvinen, P., 2012, In : International Journal of Food Microbiology. 157, 2, p. 142-149 8 p.

Research output: Contribution to journalArticleScientificpeer-review

Detection of Human Papillomaviruses by Polymerase Chain Reaction and Ligation Reaction on Universal Microarray

Ritari, J., Hultman, J., Fingerroos, R., Tarkkanen, J., Pullat, J., Paulin, L., Kivi, N., Auvinen, P. & Auvinen, E., 2012, In : PLoS One. 7, 3, p. Article Number: e34211 8 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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Metagenome, metatranscriptome and single-cell sequencing reveal microbial response to Deepwater Horizon oil spill

Mason, O. U., Hazen, T. C., Borglin, S., Chain, P. S. G., Dubinsky, E. A., Fortney, J. L., Han, J., Holman, H-Y. N., Hultman, J., Lamendella, R., Mackelprang, R., Malfatti, S., Tom, L. M., Tringe, S. G., Woyke, T., Zhou, J., Rubin, E. M. & Jansson, J. K., Sep 2012, In : ISME Journal. 6, 9, p. 1715-1727 13 p.

Research output: Contribution to journalArticleScientificpeer-review

Molecular analysis of meso- and thermophilic microbiota associated with anaerobic biowaste degradation

Ritari, J., Koskinen, K., Hultman, J., Kurola, J. M., Kymäläinen, M., Romantschuk, M., Paulin, L. & Auvinen, P., 2012, In : BMC Microbiology. 12, 14 p., 121.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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2011

Microbial sampling and analyisis of the Outokumpu deep drill hole biosphere in 2007-2009.

Itävaara, M., Nyyssönen, M., Bomberg, M., Kapanen, A., Nousiainen, A., Ahonen, L., Hultman, J., Paulin, L., Auvinen, P. & Kukkonen, IT., 2011, Outokumpu deep drilling project 2003-2010. Kukkonen, I. T. (ed.). p. 199-206 8 p. (Geological survey of Finland. Special paper; vol. 2011, no. 51).

Research output: Chapter in Book/Report/Conference proceedingChapterScientificpeer-review

Spatially differing bacterial communities in water columns of the northern Baltic Sea

Koskinen, K., Hultman, J., Paulin, L. G., Auvinen, P. & Kankaanpää, H., 2011, In : FEMS Microbiology Ecology. 75, 1, p. 99-110 12 p.

Research output: Contribution to journalArticleScientificpeer-review

2010

Bacterial diversity at different stages of the composting process

Partanen, P., Hultman, J., Paulin, L., Auvinen, P. & Romantschuk, M., 2010, In : BMC Microbiology. 10, 94, 11 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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Determination of fungal succession during municipal solid waste composting using a cloning-based analysis

Hultman, J., Vasara, T., Partanen, P., Kurola, J., Kontro, M. H., Paulin, L., Auvinen, P. & Romantschuk, M., 2010, In : Journal of Applied Microbiology. 108, 2, p. 472-487 16 p.

Research output: Contribution to journalArticleScientificpeer-review

Metagonomiikka avaa uusia ovia mikrobiologiassa

Hultman, J. & Auvinen, P., 2010, In : Duodecim. 126, 11, p. 1278-1285 8 p.

Research output: Contribution to journalArticleScientific

2009

Application of hybridization control probe to increase accuracy on ligation detection or minisequencing diagnostic microarrays

Ritari, J., Paulin, L., Hultman, J. & Auvinen, P., 2009, In : BMC research notes. 2, 249, [7] s

Research output: Contribution to journalArticleScientificpeer-review

Mikrobiyhteisöjen tutkiminen metagenomiikan avulla

Hultman, J. & Auvinen, P., 2009, In : Natura. 46, 4, p. 14-18 5 p.

Research output: Contribution to journalArticleScientific

Utility of molecular tools in monitoring large scale composting

Hultman, J., Kurola, J., Rainisalo, A., Kontro, M. & Romantschuk, M., 2009, Microbes at work from wastes to resources. Insam, H., Franke-Whittle, I. & Goberna, M. (eds.). Springer-Verlag, p. 135-151

Research output: Chapter in Book/Report/Conference proceedingChapterScientificpeer-review

2008

Probe-based negative selection for underrepresented phylotypes in large environmental clone libraries

Hultman, J., Pitkäranta, M., Romantschuk, M., Auvinen, P. & Paulin, L., 2008, In : Journal of Microbiological Methods. 75, 3, p. 457-463 7 p.

Research output: Contribution to journalArticleScientificpeer-review

Universal ligation-detection-reaction microarray applied for compost microbes

Hultman, J., Ritari, J., Romantschuk, M., Paulin, L. & Auvinen, P., 2008, In : BMC Microbiology. 8, 237, 36, p. + 4 liitel 1 p.

Research output: Contribution to journalArticleScientificpeer-review

2005

Activity, diversity and population size of ammonia-oxidising bacteria in oil-contaminated landfarming soil

Kurola, J., Salkinoja-Salonen, M., Aarnio, T., Hultman, J. & Romantschuk, M., 2005, In : FEMS Microbiology Letters. 250, 1, p. 33-38 6 p.

Research output: Contribution to journalArticleScientificpeer-review