Research output per year
Research output per year
Personal profile
Curriculum vitae
Professional experience:
- 01.2022-present. University researcher. Organismal and Evolutionary Biology Research Programme, University of Helsinki.
- 1.07.2021 – 31.12.2021. Senior researcher. Plant Molecular Biology, University of Turku, Finland.
- 1.06.2018 – 30.06.2021. Senior researcher. Turku Bioscience Centre. Finland.
- 1.05.2008 – 31.05.2018. Postdoctoral researcher. Plant Biology, Department of Biosciences, University of Helsinki, Finland
- 1.03.2005 – 30.04.2008. Postdoctoral researcher. Plant Physiology and Molecular Biology, University of Turku, Finland.
- 15.02.2003 – 28.02.2005. Postdoctoral fellow. Division of Cell Biology, Linköping University, Sweden.
Teaching:
2021, 2014-2018. Lecturer in Advanced course in Plant Physiology and Molecular Biology.
2016 Lecturer in Advanced course “Protein purification and kinase activity in plants”.
2007 Lecturer in Advanced course “Proteome Separation, Analysis and Quantification”.
Pedagogical training: Autumn 2022: UP 2.2 Assessment of Learning and Giving Feedback course, Spring 2014: University Pedagogy 1-2 course.
Education information
- Docent, Plant Physiology and Plant Molecular Biology, University of Helsinki, 1.03.2011.
- PhD, Chemistry. Chemistry Department, M.V. Lomonosov Moscow State University, 14.02.2003.
Thesis title: “Isolation and characterization of oligomeric forms of Escherichia coli inorganic pyrophosphatase. Activation by pyrophosphate.”
- MSc, Chemistry (with excellence). Chemistry Department, M.V. Lomonosov Moscow State University, 03.06.1999.
Research interests
My research interests are molecular mechanisms of plant abiotic stress response especially regulation of the signaling pathways triggered by ROS and controlled by protein kinases and phosphatases. I use biochemical and proteomics methods to elucidate the role of proteins involved in plant stresss response and characterise their interaction networks.
Fields of Science
- 1182 Biochemistry, cell and molecular biology
- plant biology
- proteomics
International and National Collaboration
Publications and projects within past five years.
-
Poly(ADP-ribose)-binding protein RCD1 is a plant PARylation reader regulated by Photoregulatory Protein Kinases
Vainonen, J. P., Gossens, R., Krasensky-Wrzaczek, J., De Masi, R., Danciu, I., Puukko, T., Battchikova, N., Jonak, C., Wirthmueller, L., Wrzaczek, M., Shapiguzov, A. & Kangasjarvi, J., 19 Apr 2023, In: Communications Biology. 6, 1, 10 p.Research output: Contribution to journal › Article › Scientific › peer-review
Open AccessFile -
Druggable cancer phosphatases
Vainonen, J., Momeny, M. & Westermarck, J., 2021, In: Science translational medicine. 13, 588, p. eabe2967Research output: Contribution to journal › Review Article › peer-review
-
Dissecting the interaction of photosynthetic electron transfer with mitochondrial signalling and hypoxic response in the Arabidopsis rcd1 mutant
Shapiguzov, A., Nikkanen, L., Fitzpatrick, D., Vainonen, J. P., Gossens, R., Alseekh, S., Aarabi, F., Tiwari, A., Blokhina, O., Panzarova, K., Benedikty, Z., Tyystjärvi, E., Fernie, A. R., Trtilek, M., Aro, E-M., Rintamäki, E. & Kangasjarvi, J., 22 Jun 2020, In: Philosophical Transactions of the Royal Society. Biological Sciences. 375, 1801, 10 p., 20190413.Research output: Contribution to journal › Article › Scientific › peer-review
Open AccessFile -
Arabidopsis RCD1 coordinates chloroplast and mitochondrial functions through interaction with ANAC transcription factors
Shapiguzov, A., Vainonen, J., Hunter, K. A., Tossavainen, H. P. M., Tiwari, A., Järvi, S., Hellman, M. H., Aarabi, F., Alseekh, S., Wybouw, B., Van Der Kelen, K., Nikkanen, L., Krasensky-Wrzaczek, J., Sipari, N. H., Keinänen, M., Tyystjaervi, E., Rintamäki, E., De Rybel, B., Salojärvi, J. T., Van Breusegem, F., & 6 others, 15 Feb 2019, In: eLife. 8, 35 p., e43284.Research output: Contribution to journal › Article › Scientific › peer-review
Open AccessFile -
Extracellular peptide Kratos restricts cell death during vascular development and stress in Arabidopsis
Escamez, S., Stael, S., Vainonen, J., Willems, P., Jin, H., Kimura, S., Van Breusegem, F., Gevaert, K., Wrzaczek, M. A. & Tuominen, H., 15 Mar 2019, In: Journal of Experimental Botany. 70, 7, p. 2199-2210 12 p.Research output: Contribution to journal › Article › Scientific › peer-review
Open AccessFile
-
Prime-XS: Identification of secreted peptides during tracheary elements differentiation
Tuominen, H., Stael, S., Gevaert, K. & Vainonen, J.
01/09/2014 → …
Project: Research project
-
Identification of secreted peptides during tracheary elements differentiation
Wrzaczek, M., Vainonen, J., Stael, S., Tuominen, H., Escamez, S. & Gevaert, K.
01/04/2014 → …
Project: Research project
-
-
Viikki Molecular Plant Sciences (VMPS)
Aalto, M., Ahlfors, R., Ainasoja, M. M., Aswathanarayana Reddy, R., Balasubramanian, U., Besseau, S., Blokhina, O., Blomster, T., Brader, G., Broberg, E., Broholm, S., Brosche, M., Campilho, A., Carlsbecker, A., Chenyi, G. G., Davidsson, P., Decourteix, M., Deng, X., Duhazé, C., Kaurilind, E., Ehonen, S., Elomaa, P., Fagerstedt, K., Gauthier, A., He, Q., Helariutta, Y., Helenius, E., Hytönen, T., Idänheimo, N., Jaspers, P., Juntheikki-Palovaara, I., Kangasjärvi, J., Kariola, T., Keceli, A., Kärkönen, A., Kollist, H., Koskela, E., Kujanpää, A., Kukkola, E., Kulichikhin, K., Kurokura, T., Laitinen, R. A. E., Lampio, A., Lehesranta, S. J., Li, J., Li, C., Li, J., Lim, K., Lindgren, O., Mähönen, A. P., Malm, J. U., Marjamaa, K., Minami, A., Mouhu, K., Ng, Y. P., Niemi, O., Nieminen, K., Overmyer, K., Paasela, T., Palva, E. T., Pennanen, V., Piisilä, M., Pöllänen, E. K., Raiskila, S., Rinne, P., Ruokolainen, S., Ruonala, R., Sjöblom, S., Salojärvi, J., Sims-Huopaniemi, K., Takahashi Schmidt, J., Teeri, T., Thitamadee, S., Tähtiharju, S., Törmäkangas, K., Vaahtera, L., Vahala, J., Vahisalu, T., Vainonen, J., van der Schoot, C., Warinowski, T., Welling, A., Virolainen-Arne, E., Wrzaczek, M., Zeng, J. & Zhubing, H.
22/02/2011 → 22/02/2011
Project: Research Evaluation 2011
Activities
-
Pre-examiner of PhD Theses
Julia Vainonen (Pre-examiner)
2014 → …Activity: Examination types › Pre-examiner of doctoral thesis
-
Pre-examiner of PhD Theses
Julia Vainonen (Pre-examiner)
2012 → …Activity: Examination types › Pre-examiner of doctoral thesis
-
Plant Signalling & Behavior (Journal)
Julia Vainonen (Reviewer)
1 Jul 2011 → 22 Jul 2011Activity: Publication peer-review and editorial work types › Peer review of manuscripts
-
International Plant Proteomics Organization INPPO (External organisation)
Julia Vainonen (Chair)
2011 → …Activity: Membership types › Membership or other role in public Finnish or international organization
-
Member of thesis committee
Julia Vainonen (Member of thesis committee / follow-up group)
2010 → …Activity: Examination types › Member of doctoral thesis committee / follow-up group