20112019
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Personal profile

Research interests

  • Clinical Bioinformatics- Biomarker discovery
  • Analysis of Multi-Omics data and apply statistical methodologies to answer key questions related to clinical research
  • Development of bioinformatics pipelines and efficient scripting to analyze and perform statistics on DNA-seq, RNA-seq data.
  • Cloud computing for data analysis
  • Data mining and machine learning on large biological datasets
  • Designing bioinformatics algorithms including unsupervised and supervised machine learning

Education information

2005-2007 B.Sc Biotechnology
2008-2010 M.Sc Bioinformatics (University of Pune)

Keywords

  • 1181 Ecology, evolutionary biology
  • Genomics
  • Evolutionary Biology
  • Microbiota
  • Genome evolution
  • Transcriptomic data analysis
  • 3111 Biomedicine
  • Genomics
  • Biomarker
  • Bioinformatics, Systems biology
  • Next generation sequencing

International and National Collaboration Publications and projects within past five years.

Publications 2013 2019

Effect of Donor Simvastatin Treatment on Gene Expression Profiles in Human Cardiac Allografts during Ischemia-Reperfusion Injury

Krebs, R., Kankainen, M., Holmström, E., Dhaygude, K., Lukac, J., Ojala, T., Mattila, P., Nykänen, A. & Lemström, K., Apr 2019, In : Journal of Heart and Lung Transplantation. 38, 4, Supplement, p. S75-S76

Research output: Contribution to journalConference articleScientificpeer-review

Genome organization and molecular characterization of the three Formica exsecta viruses—FeV1, FeV2 and FeV4

Dhaygude, K. U., Johansson, H., Kulmuni, J. K. & Sundström, L. B., 20 Feb 2019, In : PeerJ. 7, e6216, 25 p., 6216.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
File

Label-Free Proteomics Approach Characterizes Plasma Protein Signature of Donor Brain Death

Lukac, J., Saraswata, M., Joenvääräa, S., Holmström, E., Dhaygude, K., Krebs, R., Nykänen, A., Renkonen, R. & Lemström, K., Apr 2019, In : Journal of Heart and Lung Transplantation. 38, 4, Supplement, p. S159

Research output: Contribution to journalConference articleScientificpeer-review

The first draft genomes of the ant Formica exsecta, and its Wolbachia endosymbiont reveal extensive gene transfer from endosymbiont to host.

Dhaygude, K. U., Nair, A., Johansson, H., Wurm, Y. & Sundström, L. B., 16 Apr 2019, In : BMC Genomics. 20, 301, 16 p., 301.

Research output: Contribution to journalArticleScientificpeer-review

Open Access

Projects 2011 2019

AirGOs2: Aggravated airway inflammation: research on genome-scale solutions

Toppila-Salmi, S., Pekkanen, J., Karjalainen, J., Dhaygude, K., Kankainen, M., Ojala, T., Haahtela, T., Renkonen, R., Mäkelä, M., Mäkitie, A., Kauppi, P., Virkkula, P., Cardell, L., Bisgaard, H., Bonnelykke, K., Siroux, V. & Bousquet, J.

01/03/2018 → …

Project: Research project

Microbiota associated with the ant Formica exsecta

Dhaygude, K.

01/06/201228/02/2019

Project: Research project

The genome of the wood ant Formica exsecta

Dhaygude, K.

01/04/201231/03/2019

Project: Research project

The Centre of Excellence in Biological Interactions (BIOINT)

Sundström, L., Kokko, H., Bos, N., Freitak, D., Salmela, H., Helanterä, H., Johansson, H., Laakso, J., Seppä, P., Lindström, S., Morandin, C., Paviala, J., Pekkonen, M., Pulliainen, U., Ozan, M., Schultner, E., Stucki, D., Wolf, J., Galarza, J., Kulmuni, J., Hakala, S. M. & Dhaygude, K.

01/01/201231/12/2017

Project: Research project

Prizes

Chancellor's Travel Grant

Kishor Dhaygude (Recipient), Mar 2014

Prize: Prizes and awards

Luova Travel Grant

Kishor Dhaygude (Recipient), Nov 2013

Prize: Prizes and awards

Activities 2012 2015

  • 10 Organisation and participation in conferences, workshops, courses, seminars
  • 2 Academic visit to other institution
  • 1 Member of doctoral thesis committee / follow-up group

PhD follow-up group member

Ari Löytynoja (Supervisor)
1 Jan 201531 Dec 2019

Activity: Examination typesMember of doctoral thesis committee / follow-up group

Bayesian inference using BEAST

Kishor Dhaygude (Attendee)
26 May 201430 May 2014

Activity: Participating in or organising an event typesOrganisation and participation in conferences, workshops, courses, seminars

23rd Spring Symposium

Kishor Dhaygude (Member of organizing committee)
3 Mar 20145 Mar 2014

Activity: Participating in or organising an event typesOrganisation and participation in conferences, workshops, courses, seminars

Third DNA metabarcoding spring school

Kishor Dhaygude (Speaker: Presenter)
31 Mar 20146 Apr 2014

Activity: Participating in or organising an event typesOrganisation and participation in conferences, workshops, courses, seminars

1st Finnish Molecular Ecology and Evolution Symposium

Kishor Dhaygude (Attendee)
8 Oct 201410 Oct 2014

Activity: Participating in or organising an event typesOrganisation and participation in conferences, workshops, courses, seminars