Kishor Dhaygude

Bioinformatician

Bioinformatician, Department of Pathology

https://orcid.org/0000-0003-4499-6180

Emailkishor.dhaygude@helsinki.fi

PL 21 (Haartmaninkatu 3)
00014
Finland

Research activity per year

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Personal profile

Research interests

Clinical Bioinformatics- Biomarker discovery
Analysis of Multi-Omics data and apply statistical methodologies to answer key questions related to clinical research
Development of bioinformatics pipelines and efficient scripting to analyze and perform statistics on DNA-seq, RNA-seq data.
Cloud computing for data analysis
Data mining and machine learning on large biological datasets
Designing bioinformatics algorithms including unsupervised and supervised machine learning

Education information

2005-2007 B.Sc Biotechnology
2008-2010 M.Sc Bioinformatics (University of Pune)

Fields of Science

1181 Ecology, evolutionary biology
Genomics
Evolutionary Biology
Microbiota
Genome evolution
Transcriptomic data analysis
3111 Biomedicine
Genomics
Biomarker
Bioinformatics, Systems biology
Next generation sequencing

International and National Collaboration

Publications and projects within past five years.

14 Article
5 Meeting Abstract
1 Abstract
1 Letter
More
- 1 Review Article
- 1 Doctoral Thesis

Genomics of asthma, allergy and chronic rhinosinusitis: novel concepts and relevance in airway mucosa
Laulajainen-Hongisto, A., Lyly, A., Hanif, T., Dhaygude, K., Kankainen, M., Renkonen, R., Donner, K., Mattila, P., Jartti, T., Bousquet, J., Kauppi, P. & Toppila-Salmi, S., 28 Oct 2020, In: Clinical and Translational Allergy. 10, 1, 17 p., 45.
Research output: Contribution to journal › Review Article › Scientific › peer-review

Open Access
File
Instability of natural selection at candidate barrier loci underlying speciation in wood ants
Kulmuni, J., Nouhaud, P., Pluckrose, L., Satokangas, I., Dhaygude, K. & Butlin, R. K., 2 Oct 2020, In: Molecular Ecology. 29, 20, p. 3988-3999 12 p.
Research output: Contribution to journal › Article › Scientific › peer-review
Maternal smoking during pregnancy affects adult onset of asthma in offspring: a follow up from birth to age 46 years
Toppila-Salmi, S., Luukkainen, A. T., Xu, B., Lampi, J., Auvinen, J., Dhaygude, K., Järvelin, M-R. & Pekkanen, J., 1 Sep 2020, In: European Respiratory Journal. 55, 6, 11 p., 1901857.
Research output: Contribution to journal › Article › Scientific › peer-review
Plasma Extracellular Vesicles May Regulate Inflammation and Hemodynamic Changes in Brain-Dead Donors
Joo, S., Dhaygude, K., Puhka, M., Krebs, R., Rouvinen, E., Suoranta, A., Mattila, P., Kankainen, M., Raivio, P., Syrjälä, S. & Lemström, K., 2020, In: Journal of Heart and Lung Transplantation. 39, 4, p. S180 1 p.
Research output: Contribution to journal › Meeting Abstract › Research › peer-review
Plasma Metabolomic Profile of Human Brain-Dead Organ Donors
Dhaygude, K., Suominen, T., Krebs, R., Joo, S., Rouvinen, E., Velagapudi, V., Holmström, E., Nykänen, A., Syrjälä, S. & Lemström, K., Apr 2020, In: Journal of Heart and Lung Transplantation. 39, 4, p. S358-S359 2 p.
Research output: Contribution to journal › Meeting Abstract › Research › peer-review

2 Active
3 Finished

AirGOs2: Aggravated airway inflammation: research on genome-scale solutions
Toppila-Salmi, S., Pekkanen, J., Karjalainen, J., Dhaygude, K., Kankainen, M., Ojala, T., Haahtela, T., Renkonen, R., Mäkelä, M., Mäkitie, A., Kauppi, P., Virkkula, P., Cardell, L., Bisgaard, H., Bonnelykke, K., Siroux, V. & Bousquet, J.
01/03/2018 → …
Project: Research project
The cross-talk between epithelium, genome and microbiome in the pathogenesis of airway allergy, asthma and chronic rhinosinusitis
Toppila-Salmi, S., Mattila, P., Kankainen, M., Terna, E., Renkonen, J., Joenväärä, S., Kauppi, P., Mäkelä, M., Haahtela, T. M. K., Pelkonen, A. S., Auvinen, P., Alenius, H., Hanif, T., Dhaygude, K. & Renkonen, R.
01/03/2011 → …
Project: Research project
Microbiota associated with the ant Formica exsecta
Dhaygude, K.
01/06/2012 → 28/02/2019
Project: Research project
The genome of the wood ant Formica exsecta
Dhaygude, K.
01/04/2012 → 31/03/2019
Project: Research project
The Centre of Excellence in Biological Interactions (BIOINT)
Sundström, L., Kokko, H., Bos, N., Freitak, D., Salmela, H., Helanterä, H., Johansson, H., Laakso, J., Seppä, P., Lindström, S., Morandin, C., Paviala, J., Pekkonen, M., Pulliainen, U., Ozan, M., Schultner, E., Stucki, D., Wolf, J., Galarza, J., Kulmuni, J., Hakala, S. M. & Dhaygude, K.
01/01/2012 → 31/12/2017
Project: Research project

Chancellor's Travel Grant
Dhaygude, Kishor (Recipient), Mar 2014
Prize: Prizes and awards
Luova Travel Grant
Dhaygude, Kishor (Recipient), Nov 2013
Prize: Prizes and awards

10 Organisation and participation in conferences, workshops, courses, seminars
2 Academic visit to other institution
1 Member of doctoral thesis committee / follow-up group

PhD follow-up group member
Ari Löytynoja (Supervisor)
1 Jan 2015 → 31 Dec 2019
Activity: Examination types › Member of doctoral thesis committee / follow-up group
23rd Spring Symposium
Kishor Dhaygude (Member of organizing committee)
3 Mar 2014 → 5 Mar 2014
Activity: Participating in or organising an event types › Organisation and participation in conferences, workshops, courses, seminars
Bayesian inference using BEAST
Kishor Dhaygude (Attendee)
26 May 2014 → 30 May 2014
Activity: Participating in or organising an event types › Organisation and participation in conferences, workshops, courses, seminars
Third DNA metabarcoding spring school
Kishor Dhaygude (Speaker: Presenter)
31 Mar 2014 → 6 Apr 2014
Activity: Participating in or organising an event types › Organisation and participation in conferences, workshops, courses, seminars
1st Finnish Molecular Ecology and Evolution Symposium
Kishor Dhaygude (Attendee)
8 Oct 2014 → 10 Oct 2014
Activity: Participating in or organising an event types › Organisation and participation in conferences, workshops, courses, seminars