Research Output per year
Personal profile
Research interests
- Clinical Bioinformatics- Biomarker discovery
- Analysis of Multi-Omics data and apply statistical methodologies to answer key questions related to clinical research
- Development of bioinformatics pipelines and efficient scripting to analyze and perform statistics on DNA-seq, RNA-seq data.
- Cloud computing for data analysis
- Data mining and machine learning on large biological datasets
- Designing bioinformatics algorithms including unsupervised and supervised machine learning
Education information
2005-2007 B.Sc Biotechnology
2008-2010 M.Sc Bioinformatics (University of Pune)
2008-2010 M.Sc Bioinformatics (University of Pune)
Fields of Science
- 1181 Ecology, evolutionary biology
- Genomics
- Evolutionary Biology
- Microbiota
- Genome evolution
- Transcriptomic data analysis
- 3111 Biomedicine
- Genomics
- Biomarker
- Bioinformatics, Systems biology
- Next generation sequencing
International and National Collaboration
Publications and projects within past five years.
Publications
Birch pollen allergen immunotherapy reprograms nasal epithelial transcriptome and recovers microbial diversity
Hanif, T., Dhaygude, K., Kankainen, M., Renkonen, J., Mattila, P., Ojala, T., Joenvaara, S., Mäkelä, M., Pelkonen, A., Kauppi, P., Haahtela, T., Renkonen, R. & Toppila-Salmi, S., Jun 2019, In : Journal of Allergy and Clinical Immunology. 143, 6, p. 2293-+ 20 p.Research output: Contribution to journal › Letter › Scientific › peer-review
Open Access
File
Donor Simvastatin Treatment in Heart Transplantation A Randomized and Blinded Clinical Trial
Nykänen, A., Holmström, E. J., Tuuminen, R., Krebs, R., Dhaygude, K., Kankainen, M., Jokinen, J. J., Lommi, J., Helanterä, I., Räisänen-Sokolowski, A., Syrjälä, S. O. & Lemström, K. B., 20 Aug 2019, In : Circulation . 140, 8, p. 627-640 14 p.Research output: Contribution to journal › Article › Scientific › peer-review
Effect of Donor Simvastatin Treatment on Gene Expression Profiles in Human Cardiac Allografts during Ischemia-Reperfusion Injury
Krebs, R., Kankainen, M., Holmström, E., Dhaygude, K., Lukac, J., Ojala, T., Mattila, P., Nykänen, A. & Lemström, K., Apr 2019, In : Journal of Heart and Lung Transplantation. 38, 4, Supplement, p. S75-S76 2 p.Research output: Contribution to journal › Meeting Abstract › Research › peer-review
Open Access
File
Evaluating responses to temperature during pre-metamorphosis and carry-over effects at post-metamorphosis in the wood tiger moth (Arctia plantaginis)
A., G. J., Dhaygude, K., Behnaz, G., Kaisa, S., Janne, V. & Johanna, M., 14 Oct 2019, In : Philosophical Transactions of the Royal Society. Biological Sciences. 374, 1783Research output: Contribution to journal › Article › Scientific › peer-review
Open Access
File
Evidence for natural selection and barrier leakage in candidate loci underlying speciation in wood ants
Kulmuni, J., Nouhaud, P., Pluckrose, L., Satokangas, I., Dhaygude, K. & Butlin, RK., 25 Jun 2019, (Submitted) In : bioRxiv : the preprint server for biology .Research output: Contribution to journal › Article › Scientific
Projects
AirGOs2: Aggravated airway inflammation: research on genome-scale solutions
Toppila-Salmi, S., Pekkanen, J., Karjalainen, J., Dhaygude, K., Kankainen, M., Ojala, T., Haahtela, T., Renkonen, R., Mäkelä, M., Mäkitie, A., Kauppi, P., Virkkula, P., Cardell, L., Bisgaard, H., Bonnelykke, K., Siroux, V. & Bousquet, J.
01/03/2018 → …
Project: Research project
The cross-talk between epithelium, genome and microbiome in the pathogenesis of airway allergy, asthma and chronic rhinosinusitis
Toppila-Salmi, S., Mattila, P., Kankainen, M., Terna, E., Renkonen, J., Joenväärä, S., Kauppi, P., Mäkelä, M., Haahtela, T. M. K., Pelkonen, A. S., Auvinen, P., Alenius, H., Hanif, T., Dhaygude, K. & Renkonen, R.
01/03/2011 → …
Project: Research project
The Centre of Excellence in Biological Interactions (BIOINT)
Sundström, L., Kokko, H., Bos, N., Freitak, D., Salmela, H., Helanterä, H., Johansson, H., Laakso, J., Seppä, P., Lindström, S., Morandin, C., Paviala, J., Pekkonen, M., Pulliainen, U., Ozan, M., Schultner, E., Stucki, D., Wolf, J., Galarza, J., Kulmuni, J., Hakala, S. M. & Dhaygude, K.
01/01/2012 → 31/12/2017
Project: Research project
Prizes
Activities
PhD follow-up group member
Ari Löytynoja (Supervisor)1 Jan 2015 → 31 Dec 2019
Activity: Examination types › Member of doctoral thesis committee / follow-up group
23rd Spring Symposium
Kishor Dhaygude (Member of organizing committee)3 Mar 2014 → 5 Mar 2014
Activity: Participating in or organising an event types › Organisation and participation in conferences, workshops, courses, seminars
Bayesian inference using BEAST
Kishor Dhaygude (Attendee)26 May 2014 → 30 May 2014
Activity: Participating in or organising an event types › Organisation and participation in conferences, workshops, courses, seminars
Third DNA metabarcoding spring school
Kishor Dhaygude (Speaker: Presenter)31 Mar 2014 → 6 Apr 2014
Activity: Participating in or organising an event types › Organisation and participation in conferences, workshops, courses, seminars
Organism Biology Annual Workshop
Kishor Dhaygude (Speaker: Presenter)4 Jun 2014 → 5 Jun 2014
Activity: Participating in or organising an event types › Organisation and participation in conferences, workshops, courses, seminars