Research Output per year
Personal profile
Research interests
- Clinical Bioinformatics- Biomarker discovery
- Analysis of Multi-Omics data and apply statistical methodologies to answer key questions related to clinical research
- Development of bioinformatics pipelines and efficient scripting to analyze and perform statistics on DNA-seq, RNA-seq data.
- Cloud computing for data analysis
- Data mining and machine learning on large biological datasets
- Designing bioinformatics algorithms including unsupervised and supervised machine learning
Education information
2005-2007 B.Sc Biotechnology
2008-2010 M.Sc Bioinformatics (University of Pune)
2008-2010 M.Sc Bioinformatics (University of Pune)
Keywords
- 1181 Ecology, evolutionary biology
- Genomics
- Evolutionary Biology
- Microbiota
- Genome evolution
- Transcriptomic data analysis
- 3111 Biomedicine
- Genomics
- Biomarker
- Bioinformatics, Systems biology
- Next generation sequencing
International and National Collaboration
Publications and projects within past five years.
Publications 2013 2019
Birch pollen allergen immunotherapy reprograms nasal epithelial transcriptome and recovers microbial diversity
Hanif, T., Dhaygude, K., Kankainen, M., Renkonen, J., Mattila, P., Ojala, T., Joenvaara, S., Mäkelä, M., Pelkonen, A., Kauppi, P., Haahtela, T., Renkonen, R. & Toppila-Salmi, S., Feb 2019, In : Journal of Allergy and Clinical Immunology.Research output: Contribution to journal › Article › Scientific › peer-review
Open Access
Effect of Donor Simvastatin Treatment on Gene Expression Profiles in Human Cardiac Allografts during Ischemia-Reperfusion Injury
Krebs, R., Kankainen, M., Holmström, E., Dhaygude, K., Lukac, J., Ojala, T., Mattila, P., Nykänen, A. & Lemström, K., Apr 2019, In : Journal of Heart and Lung Transplantation. 38, 4, Supplement, p. S75-S76Research output: Contribution to journal › Conference article › Scientific › peer-review
Genome organization and molecular characterization of the three Formica exsecta viruses—FeV1, FeV2 and FeV4
Dhaygude, K. U., Johansson, H., Kulmuni, J. K. & Sundström, L. B., 20 Feb 2019, In : PeerJ. 7, e6216, 25 p., 6216.Research output: Contribution to journal › Article › Scientific › peer-review
Open Access
File
Label-Free Proteomics Approach Characterizes Plasma Protein Signature of Donor Brain Death
Lukac, J., Saraswata, M., Joenvääräa, S., Holmström, E., Dhaygude, K., Krebs, R., Nykänen, A., Renkonen, R. & Lemström, K., Apr 2019, In : Journal of Heart and Lung Transplantation. 38, 4, Supplement, p. S159Research output: Contribution to journal › Conference article › Scientific › peer-review
The first draft genomes of the ant Formica exsecta, and its Wolbachia endosymbiont reveal extensive gene transfer from endosymbiont to host.
Dhaygude, K. U., Nair, A., Johansson, H., Wurm, Y. & Sundström, L. B., 16 Apr 2019, In : BMC Genomics. 20, 301, 16 p., 301.Research output: Contribution to journal › Article › Scientific › peer-review
Open Access
Projects 2011 2019
AirGOs2: Aggravated airway inflammation: research on genome-scale solutions
Toppila-Salmi, S., Pekkanen, J., Karjalainen, J., Dhaygude, K., Kankainen, M., Ojala, T., Haahtela, T., Renkonen, R., Mäkelä, M., Mäkitie, A., Kauppi, P., Virkkula, P., Cardell, L., Bisgaard, H., Bonnelykke, K., Siroux, V. & Bousquet, J.
01/03/2018 → …
Project: Research project
The cross-talk between epithelium, genome and microbiome in the pathogenesis of airway allergy, asthma and chronic rhinosinusitis
Toppila-Salmi, S., Mattila, P., Kankainen, M., Terna, E., Renkonen, J., Joenväärä, S., Kauppi, P., Mäkelä, M., Haahtela, T. M. K., Pelkonen, A. S., Auvinen, P., Alenius, H., Hanif, T., Dhaygude, K. & Renkonen, R.
01/03/2011 → …
Project: Research project
The Centre of Excellence in Biological Interactions (BIOINT)
Sundström, L., Kokko, H., Bos, N., Freitak, D., Salmela, H., Helanterä, H., Johansson, H., Laakso, J., Seppä, P., Lindström, S., Morandin, C., Paviala, J., Pekkonen, M., Pulliainen, U., Ozan, M., Schultner, E., Stucki, D., Wolf, J., Galarza, J., Kulmuni, J., Hakala, S. M. & Dhaygude, K.
01/01/2012 → 31/12/2017
Project: Research project
Prizes
Activities 2012 2015
PhD follow-up group member
Ari Löytynoja (Supervisor)1 Jan 2015 → 31 Dec 2019
Activity: Examination types › Member of doctoral thesis committee / follow-up group
Bayesian inference using BEAST
Kishor Dhaygude (Attendee)26 May 2014 → 30 May 2014
Activity: Participating in or organising an event types › Organisation and participation in conferences, workshops, courses, seminars
23rd Spring Symposium
Kishor Dhaygude (Member of organizing committee)3 Mar 2014 → 5 Mar 2014
Activity: Participating in or organising an event types › Organisation and participation in conferences, workshops, courses, seminars
Third DNA metabarcoding spring school
Kishor Dhaygude (Speaker: Presenter)31 Mar 2014 → 6 Apr 2014
Activity: Participating in or organising an event types › Organisation and participation in conferences, workshops, courses, seminars
1st Finnish Molecular Ecology and Evolution Symposium
Kishor Dhaygude (Attendee)8 Oct 2014 → 10 Oct 2014
Activity: Participating in or organising an event types › Organisation and participation in conferences, workshops, courses, seminars