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Krister Wennerberg

  • PL 20 (Tukholmankatu 8)

    00014

    Finland

  • Viikinkaari 5, Biocenter 2

    00790 Helsinki

    Finland

19962020
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Publications 1996 2019

2019

8-chloro-adenosine activity in FLT3-ITD acute myeloid leukemia

Buettner, R., Le Xuan Truong Nguyen, Kumar, B., Morales, C., Liu, C., Chen, L. S., Pemovska, T., Synold, T. W., Palmer, J., Thompson, R., Li, L., Dinh Hoa Hoang, Zhang, B., Ghoda, L., Kowolik, C., Kontro, M., Leitch, C., Wennerberg, K., Yu, X., Chen, C-C. & 5 othersHorne, D., Gandhi, V., Pullarkat, V., Marcucci, G. & Rosen, S. T., Sep 2019, In : Journal of Cellular Physiology. 234, 9, p. 16295-16303 9 p.

Research output: Contribution to journalArticleScientificpeer-review

Anagrelide for Gastrointestinal Stromal Tumor

Pulkka, O-P., Gebreyohannes, Y. K., Wozniak, A., Mpindi, J-P., Tynninen, O., Icay, K., Cervera, A., Keskitalo, S., Murumägi, A., Kulesskiy, E., Laaksonen, M., Wennerberg, K., Varjosalo, M., Laakkonen, P., Lehtonen, R., Hautaniemi, S., Kallioniemi, O., Schöffski, P., Sihto, H. & Joensuu, H., 1 Mar 2019, In : Clinical Cancer Research. 25, 5, p. 1676-1687 12 p.

Research output: Contribution to journalArticleScientificpeer-review

Drug sensitivity testing on patient-derived sarcoma cells predicts patient response to treatment and identifies c-Sarc inhibitors as active drugs for translocation sarcomas

Brodin, B. A., Wennerberg, K., Lidbrink, E., Brosjö, O., Potdar, S., Wilson, J. N., Ma, L., Moens, L. N., Hesla, A., Porovic, E., Bernhardsson, E., Papakonstantinou, A., Bauer, H., Tsagkozis, P., von Sivers, K., Wejde, J., Östling, P., Kallioniemi, O. & Stragliotto, C. L., 19 Feb 2019, In : British Journal of Cancer. 120, 4, p. 435-443 9 p.

Research output: Contribution to journalArticleScientificpeer-review

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Multi-parametric single cell evaluation defines distinct drug responses in healthy hematological cells that are retained in corresponding malignant cell types

Majumder, M. M., Leppä, A-M., Hellesøy, M., Dowling, P., Malyutina, A., Kopperud, R., Bazou, D., Andersson, E., Parsons, A., Tang, J., Kallioniemi, O., Mustjoki, S., O'Gorman, P., Wennerberg, K., Porkka, K., Gjertsen, B. T. & Heckman, C. A., 22 Aug 2019, In : Haematologica. p. haematol.2019.217414

Research output: Contribution to journalArticleScientificpeer-review

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Network pharmacology modeling identifies synergistic Aurora B and ZAK interaction in triple-negative breast cancer

Tang, J., Gautam, P., Gupta, A., He, L., Timonen, S., Akimov, Y., Wang, W., Szwajda, A., Jaiswal, A., Turei, D., Yadav, B., Kankainen, M., Saarela, J., Saez-Rodriguez, J., Wennerberg, K. & Aittokallio, T., 2019, In : npj Systems Biology and Applications. 5, 1

Research output: Contribution to journalArticleScientificpeer-review

Phenotypic Screening Combined with Machine Learning for Efficient Identification of Breast Cancer-Selective Therapeutic Targets

Gautam, P., Jaiswal, A., Aittokallio, T., Al-Ali, H. & Wennerberg, K., 18 Jul 2019, In : Cell chemical biology. 26, 7, p. 970-+ 14 p.

Research output: Contribution to journalArticleScientificpeer-review

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2018

Discovery of novel drug sensitivities in T-PLL by high-throughput ex vivo drug testing and mutation profiling

Andersson, E. I., Pützer, S., Yadav, B., Dufva, O., Khan, S., He, L., Sellner, L., Schrader, A., Crispatzu, G., Oleś, M., Zhang, H., Adnan-Awad, S., Lagström, S., Bellanger, D., Mpindi, J. P., Eldfors, S., Pemovska, T., Pietarinen, P., Lauhio, A., Tomska, K. & 19 othersCuesta-Mateos, C., Faber, E., Koschmieder, S., Brümmendorf, T. H., Kytölä, S., Savolainen, E-R., Siitonen, T., Ellonen, P., Kallioniemi, O., Wennerberg, K., Ding, W., Stern, M-H., Huber, W., Anders, S., Tang, J., Aittokallio, T., Zenz, T., Herling, M. & Mustjoki, S., Mar 2018, In : Leukemia. 32, 3, p. 774-787 14 p.

Research output: Contribution to journalArticleScientificpeer-review

Drug-Sensitivity Screening and Genomic Characterization of 45 HPV-Negative Head and Neck Carcinoma Cell Lines for Novel Biomarkers of Drug Efficacy

Lepikhova, T., Karhemo, P-R., Louhimo, R., Yadav, B., Murumägi, A., Kulesskiy, E., Kivento, M., Sihto, H., Grenman, R., Syrjänen, S. M., Kallioniemi, O., Aittokallio, T., Wennerberg, K., Joensuu, H. & Monni, O., Sep 2018, In : Molecular Cancer Therapeutics. 17, 9, p. 2060-2071 12 p.

Research output: Contribution to journalArticleScientificpeer-review

Drug Target Commons: A Community Effort to Build a Consensus Knowledge Base for Drug-Target Interactions

Tang, J., Tanoli, Z-R., Ravikumar, B., Alam, Z., Rebane, A., Vähä-Koskela, M., Peddinti, G., van Adrichem, A. J., Wakkinen, J., Jaiswal, A., Karjalainen, E., Gautam, P., He, L., Parri, E., Khan, S., Gupta, A., Ali, M., Yetukuri, L., Gustavsson, A-L., Seashore-Ludlow, B. & 6 othersHersey, A., Leach, A. R., Overington, J. P., Repasky, G., Wennerberg, K. & Aittokallio, T., 15 Feb 2018, In : Cell chemical biology. 25, 2, p. 224-+ 8 p.

Research output: Contribution to journalArticleScientificpeer-review

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Genomic perturbations reveal distinct regulatory networks in intrahepatic cholangiocarcinoma

Nepal, C., O'Rourke, C. J., Oliveira, D. V. N. P., Taranta, A., Shema, S., Gautam, P., Calderaro, J., Barbour, A., Raggi, C., Wennerberg, K., Wang, X. W., Lautem, A., Roberts, L. R. & Andersen, J. B., Sep 2018, In : Hepatology. 68, 3, p. 949-963 15 p.

Research output: Contribution to journalArticleScientificpeer-review

Global proteomics profiling improves drug sensitivity prediction: results from a multi-omics, pan-cancer modeling approach

Ali, M., Khan, S. A., Wennerberg, K. & Aittokallio, T., 15 Apr 2018, In : Bioinformatics. 34, 8, p. 1353-1362 10 p.

Research output: Contribution to journalArticleScientificpeer-review

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KRAS Suppression-Induced Degradation of MYC Is Antagonized by a MEK5-ERK5 Compensatory Mechanism

Vaseva, A. V., Blake, D. R., Gilbert, T. S. K., Ng, S., Hostetter, G., Azam, S. H., Ozkan-Dagliyan, I., Gautam, P., Bryant, K. L., Pearce, K. H., Herring, L. E., Han, H., Graves, L. M., Witkiewicz, A. K., Knudsen, E. S., Pecot, C., Rashid, N., Houghton, P. J., Wennerberg, K., Cox, A. D. & 1 othersDer, C. J., 12 Nov 2018, In : Cancer Cell. 34, 5, p. 807-+ 23 p.

Research output: Contribution to journalArticleScientificpeer-review

Methods for High-throughput Drug Combination Screening and Synergy Scoring

He, L., Kulesskiy, E., Saarela, J. S., Turunen, L. L., Wennerberg, J. K., Aittokallio, T. A. & Tang, J., 2018, Cancer Systems Biology. von Stechow, L. (ed.). New York: Humana Press, p. 351-398 48 p. (Methods in molecular biology; no. 1711).

Research output: Chapter in Book/Report/Conference proceedingChapterScientificpeer-review

Multi-Parametric Single Cell Profiling Defines Distinct Drug Responses in Healthy Hematological Cell Lineages That Are Retained in Corresponding Malignant Cell Types

Majumder, MM., Leppä, A-M., Hellesøy, M., Dowling, P., Malyutina, A., Bazou, D., Andersson, E. I., Parsons, A., Tang, J., Kallioniemi, O-P., Mustjoki, S. M., O'Gorman, P., Wennerberg, J. K., Porkka, K. V. K., Gjertsen, B-T. & Heckman, C. A., 2018, In : Blood. 132

Research output: Contribution to journalMeeting AbstractResearchpeer-review

Open Access

Patient-Customized Drug Combination Prediction and Testing for T-cell Prolymphocytic Leukemia Patients

He, L., Tang, J., Andersson, E. I., Timonen, S., Koschmieder, S., Wennerberg, K., Mustjoki, S. & Aittokallio, T., 1 May 2018, In : Cancer Research. 78, 9, p. 2407-2418 12 p.

Research output: Contribution to journalArticleScientificpeer-review

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PP2A inhibition is a druggable MEK inhibitor resistance mechanism in KRAS-mutant lung cancer cells

Kauko, O., O'Connor, C. M., Kulesskiy, E., Sangodkar, J., Aakula, A., Izadmehr, S., Yetukuri, L., Yadav, B., Padzik, A., Laajala, T. D., Haapaniemi, P., Momeny, M., Varila, T., Ohlmeyer, M., Aittokallio, T., Wennerberg, K., Narla, G. & Westermarck, J., 18 Jul 2018, In : Science translational medicine. 10, 450, 12 p., 1093.

Research output: Contribution to journalArticleScientificpeer-review

Targeting autophagy by small molecule inhibitors of vacuolar protein sorting 34 (Vps34) improves the sensitivity of breast cancer cells to Sunitinib

Dyczynski, M., Yu, Y., Otrocka, M., Parpal, S., Braga, T., Henley, A. B., Zazzi, H., Lerner, M., Wennerberg, K., Viklund, J., Martinsson, J., Grandér, D., De Milito, A. & Pokrovskaja Tamm, K., 25 Jul 2018, In : Cancer Letters. 435, p. 32-43 12 p.

Research output: Contribution to journalArticleScientificpeer-review

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Toward universal protein post-translational modification detection in high throughput format

Harma, H., Tong-Ochoa, N., van Adrichem, A. J., Jelesarov, I., Wennerberg, K. & Kopra, K., 21 Mar 2018, In : Chemical Communications. 54, 23, p. 2910-2913 4 p.

Research output: Contribution to journalArticleScientificpeer-review

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2017

A Community Challenge for Inferring Genetic Predictors of Gene Essentialities through Analysis of a Functional Screen of Cancer Cell Lines

Gönen, M., Weir, B. A., Cowley, G. S., Vazquez, F., Guan, Y., Jaiswal, A., Karasuyama, M., Uzunangelov, V., Wang, T., Tsherniak, A., Howell, S., Marbach, D., Hoff, B., Norman, T. C., Airola, A., Bivol, A., Bunte, K., Carlin, D., Chopra, S., Deran, A. & 26 othersEllrott, K., Gopalacharyulu, P., Graim, K., Kaski, S., Khan, S. A., Newton, Y., Ng, S., Pahikkala, T., Paull, E., Sokolov, A., Tang, H., Tang, J., Wennerberg, K., Xie, Y., Zhan, X., Zhu, F., Aittokallio, T., Mamitsuka, H., Stuart, J. M., Boehm, J. S., Root, D. E., Xiao, G., Stolovitzky, G., Hahn, W. C., Margolin, A. A. & Broad-DREAM Community, 22 Nov 2017, In : Cell Systems. 5, 5, p. 485-+ 16 p.

Research output: Contribution to journalArticleScientificpeer-review

A transcriptomics data-driven gene space accurately predicts liver cytopathology and drug-induced liver injury

Kohonen, P., Parkkinen, J. A., Willighagen, E. L., Ceder, R., Wennerberg, K., Kaski, S. & Grafstrom, R. C., 3 Jul 2017, In : Nature Communications. 8, 15 p., 15932.

Research output: Contribution to journalArticleScientificpeer-review

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Computational-experimental approach to drug-target interaction mapping: A case study on kinase inhibitors

Cichonska, A., Ravikumar, B., Parri, E., Timonen, S., Pahikkala, T., Airola, A., Wennerberg, K., Rousu, J. & Aittokallio, T., 7 Aug 2017, In : PLoS Computational Biology. 13, 8, 28 p., 1005678.

Research output: Contribution to journalArticleScientificpeer-review

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Differentiation status of primary chronic myeloid leukemia cells affects sensitivity to BCR-ABL1 inhibitors

Pietarinen, P. O., Eide, C. A., Ayuda-Duran, P., Potdar, S., Kuusanmaki, H., Andersson, E. I., Mpindi, J. P., Pemovska, T., Kontro, M., Heckman, C. A., Kallioniemi, O., Wennerberg, K., Hjorth-Hansen, H., Druker, B. J., Enserink, J. M., Tyner, J. W., Mustjoki, S. & Porkka, K., 4 Apr 2017, In : Oncotarget. 8, 14, p. 22606-22615 10 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access

Drug sensitivity profiling identifies potential therapies for lymphoproliferative disorders with overactive JAK/STAT3 signaling

Kuusanmäki, H., Dufva, O., Parri, E., van Adrichem, A. J., Rajala, H., Majumder, M. M., Yadav, B., Parsons, A., Chan, W. C., Wennerberg, K., Mustjoki, S. & Heckman, C. A., 14 Nov 2017, In : Oncotarget. 8, 57, p. 97516-97527 12 p.

Research output: Contribution to journalArticleScientificpeer-review

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Enhanced sensitivity to glucocorticoids in cytarabine-resistant AML

Malani, D., Murumagi, A., Yadav, B., Kontro, M., Eldfors, S., Kumar, A., Karjalainen, R., Majumder, M. M., Ojamies, P., Pemovska, T., Wennerberg, K., Heckman, C., Porkka, K., Wolf, M., Aittokallio, T. & Kallioniemi, O., May 2017, In : Leukemia. 31, 5, p. 1187-1195 9 p.

Research output: Contribution to journalArticleScientificpeer-review

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High-Throughput Dual Screening Method for Ras Activities and Inhibitors

Kopra, K., van Adrichem, A. J., Salo-Ahen, O. M. H., Peltonen, J., Wennerberg, K. & Harma, H., 18 Apr 2017, In : Analytical Chemistry. 89, 8, p. 4508-4516 9 p.

Research output: Contribution to journalArticleScientificpeer-review

HOX gene expression predicts response to BCL-2 inhibition in acute myeloid leukemia

Kontro, M., Kumar, A., Majumder, M. M., Eldfors, S., Parsons, A., Pemovska, T., Saarela, J. S., Yadav, B., Malani, D. R., Fløisand, Y., Höglund, M., Remes, K., Gjertsen, B-T., Kallioniemi, O-P., Wennerberg, J. K., Heckman, C. A. & Porkka, K. V. K., 2017, In : Leukemia. 31, 2, p. 301-309 9 p.

Research output: Contribution to journalArticleScientificpeer-review

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Idelalisib sensitivity and mechanisms of disease progression in relapsed TCF3-PBX1 acute lymphoblastic leukemia

Eldfors, S., Kuusanmäki, H., Kontro, M., Majumder, M. M., Parsons, A., Edgren, H., Pemovska, T., Kallioniemi, O., Wennerberg, K., Gökbuget, N., Burmeister, T., Porkka, K. & Heckman, C. A., 2017, In : Leukemia. 31, 1, p. 51-57 7 p.

Research output: Contribution to journalArticleScientificpeer-review

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JAK1/2 and BCL2 inhibitors synergize to counteract bone marrow stromal cell-induced protection of AML

Karjalainen, R., Pemovska, T., Popa, M., Liu, M., Javarappa, K. K., Majumder, M. M., Yadav, B., Tamborero, D., Tang, J., Bychkov, D., Kontro, M., Parsons, A., Suvela, M., Safont, M. M., Porkka, K., Aittokallio, T., Kallioniemi, O., McCormack, E., Gjertsen, B. T., Wennerberg, K. & 2 othersKnowles, J. & Heckman, C. A., 10 Aug 2017, In : Blood. 130, 6, p. 789-802 14 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access

Monitoring therapy responses at the leukemic subclone level by ultra-deep amplicon resequencing in acute myeloid leukemia

Ojamies, P., Kontro, M., Edgren, H., Ellonen, P., Lagström, S., Almusa, H., Miettinen, T., Eldfors, S., Tamborero, D., Wennerberg, K., Heckman, C., Porkka, K., Wolf, M. & Kallioniemi, O., 2017, In : Leukemia. 31, 5, p. 1048-1058 11 p.

Research output: Contribution to journalArticleScientificpeer-review

Seed-effect modeling improves the consistency of genome-wide loss-of-function screens and identifies synthetic lethal vulnerabilities in cancer cells

Jaiswal, A., Peddinti, G., Akimov, Y., Wennerberg, K., Kuznetsov, S., Tang, J. & Aittokallio, T., 1 Jun 2017, In : Genome medicine. 9, 15 p., 51.

Research output: Contribution to journalArticleScientificpeer-review

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Systematic identification of feature combinations for predicting drug response with Bayesian multi-view multi-task linear regression

Ammad-ud-din, M., Khan, S. A., Wennerberg, K. & Aittokallio, T., 15 Jul 2017, In : Bioinformatics. 33, 14, p. I359-I368 10 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
2016

c-Abl Inhibitors Enable Insights into the Pathophysiology and Neuroprotection in Parkinson's Disease

Lindholm, D., Pham, D. D., Cascone, A., Eriksson, O., Wennerberg, K. & Saarma, M., 26 Oct 2016, In : Frontiers in aging neuroscience. 8, 6 p., 254.

Research output: Contribution to journalReview ArticleScientificpeer-review

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Cancer Cell Drug Response Transcriptomes in 3D

Wennerberg, K., 17 Nov 2016, In : Cell chemical biology. 23, 11, p. 1323-1324 2 p.

Research output: Contribution to journalArticleScientific

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Consistency in drug response profiling

Mpindi, J. P., Yadav, B., Ostling, P., Gautam, P., Malani, D., Murumagi, A., Hirasawa, A., Kangaspeska, S., Wennerberg, K., Kallioniemi, O. & Aittokallio, T., 1 Dec 2016, In : Nature. 540, 7631, p. E5-E6 2 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access

Crowdsourced assessment of common genetic contribution to predicting anti-TNF treatment response in rheumatoid arthritis

Sieberts, S. K., Zhu, F., Garcia-Garcia, J., Stahl, E., Pratap, A., Pandey, G., Pappas, D., Aguilar, D., Anton, B., Bonet, J., Eksi, R., Fornes, O., Guney, E., Li, H., Marin, M. A., Panwar, B., Planas-Iglesias, J., Poglayen, D., Cui, J., Falcao, A. O. & 31 othersSuver, C., Hoff, B., Balagurusamy, V. S. K., Dillenberger, D., Neto, E. C., Norman, T., Aittokallio, T., Ammad-ud-din, M., Azencott, C-A., Bellon, V., Boeva, V., Bunte, K., Chheda, H., Cheng, L., Corander, J., Dumontier, M., Goldenberg, A., Gopalacharyulu, P., Hajiloo, M., Hidru, D., Jaiswal, A., Kaski, S., Khalfaoui, B., Khan, S. A., Kramer, E. R., Marttinen, P., Pirinen, M., Saarela, J., Tang, J., Wennerberg, K. & Rheumatoid Arth Challenge, Aug 2016, In : Nature Communications. 7, 9 p., 12460.

Research output: Contribution to journalArticleScientificpeer-review

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Discovery of berberine, abamectin and ivermectin as antivirals against chikungunya and other alphaviruses

Varghese, F. S., Kaukinen, P., Glasker, S., Bespalov, M., Hanski, L., Wennerberg, K., Kummerer, B. M. & Ahola, T., Feb 2016, In : Antiviral Research. 126, p. 117-124 8 p.

Research output: Contribution to journalArticleScientificpeer-review

Identification of selective cytotoxic and synthetic lethal drug responses in triple negative breast cancer cells

Gautam, P., Karhinen, L., Szwajda, A., Jha, S. K., Yadav, B., Aittokallio, T. & Wennerberg, K., 10 May 2016, In : Molecular Cancer. 15, 16 p., 34.

Research output: Contribution to journalArticleScientificpeer-review

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Long-Term ERK Inhibition in KRAS-Mutant Pancreatic Cancer Is Associated with MYC Degradation and Senescence-like Growth Suppression

Hayes, T. K., Neel, N. F., Hu, C., Gautam, P., Chenard, M., Long, B., Aziz, M., Kassner, M., Bryant, K. L., Pierobon, M., Marayati, R., Kher, S., George, S. D., Xu, M., Wang-Gillam, A., Samatar, A. A., Maitra, A., Wennerberg, K., Petricoin, E. F., Yin, H. H. & 4 othersNelkin, B., Cox, A. D., Yeh, J. J. & Der, C. J., 11 Jan 2016, In : Cancer Cell. 29, 1, p. 75-89 15 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access

Precision Cancer Medicine in the Acoustic Dispensing Era: Ex Vivo Primary Cell Drug Sensitivity Testing

Kulesskiy, E., Saarela, J., Turunen, L. & Wennerberg, K., Feb 2016, In : Journal of Laboratory Automation. 21, 1, p. 27-36 10 p.

Research output: Contribution to journalArticleScientificpeer-review

2015

Axitinib effectively inhibits BCR-ABL1(T315I) with a distinct binding conformation

Pemovska, T., Johnson, E., Kontro, M., Repasky, G. A., Chen, J., Wells, P., Cronin, C. N., McTigue, M., Kallioniemi, O., Porkka, K., Murray, B. W. & Wennerberg, K., 5 Mar 2015, In : Nature. 519, 7541, p. 102-U225 13 p.

Research output: Contribution to journalArticleScientificpeer-review

Bioluminescent, Nonlytic, Real-Time Cell Viability Assay and Use in Inhibitor Screening

Duellman, S. J., Zhou, W., Meisenheimer, P., Vidugiris, G., Cali, J. J., Gautam, P., Wennerberg, K. & Vidugiriene, J., 1 Oct 2015, In : Assay and drug development technologies. 13, 8, p. 456-465 10 p.

Research output: Contribution to journalArticleScientificpeer-review

Discovery of MINC1, a GTPase-Activating Protein Small Molecule Inhibitor, Targeting MgcRacGAP

van Adrichem, A. J., Fagerholm, A., Turunen, L., Lehto, A., Saarela, J., Koskinen, A., Repasky, G. A. & Wennerberg, K., 2015, In : Combinatorial Chemistry & High Throughput Screening. 18, 1, p. 3-17 15 p.

Research output: Contribution to journalArticleScientificpeer-review

From drug response profiling to target addiction scoring in cancer cell models

Yadav, B., Gopalacharyulu, P., Pemovska, T., Khan, S. A., Szwajda, A., Tang, J., Wennerberg, K. & Aittokallio, T., Oct 2015, In : Disease Models & Mechanisms. 8, 10, p. 1255-1264 10 p.

Research output: Contribution to journalArticleScientificpeer-review

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Impact of normalization methods on high-throughput screening data with high hit rates and drug testing with dose-response data

Mpindi, J-P., Potdar, S., Bychkov, D., Saarela, J., Saeed, K., Wennerberg, K., Aittokallio, T., Östling, P. & Kallioniemi, O., 1 Dec 2015, In : Bioinformatics. 31, 23, p. 3815-3821 7 p.

Research output: Contribution to journalArticleScientificpeer-review

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Individualised systems medicine: Next-generation precision cancer medicine and drug positioning

Pemovska, T., Östling, P., Heckman, C., Kallioniemi, O. & Wennerberg, K., 2015, In : DDW. Drug discovery world. 16, 3, p. 47-53 7 p.

Research output: Contribution to journalArticleScientific