Research output per year
Research output per year
Personal profile
Fields of Science
- 113 Computer and information sciences
Collaborations and top research areas from the last five years
Recent external collaboration on country/territory level. Dive into details by clicking on the dots or
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A standardized pan-cancer framework for spatial profiling of the tumor microenvironment using multiplex immunofluorescence.
van der Zande, S., Hasu, O. H., He, Z., Välimäki, K. E., Mirtti, T., Rannikko, A. S., Lassus, H. J., Ristimäki, A. P., Österlund, P., Aittokallio, T. A., Paavolainen, L., Loukovaara, M. J., Kallioniemi, O. P., Bützow, R. C. & Pellinen, T. S., 3 Apr 2026, In: Cancer Research. 86, 7, 1 p., 792.Research output: Contribution to journal › Meeting Abstract › peer-review
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ROR1-PI3K/AKT signaling drives adaptive resistance to cell cycle blockade in TP53 mutated ovarian cancer
Raivola, J., Rantanen, F., Dini, A., Piki, E., Barker, H., Multamäki, E., Bentz, F., Sunkel, P., Kiiski, A.-M., Paavolainen, L., Murumägi, A. & Ungureanu, E. D., 27 Feb 2026, In: Cell Death and Disease. 17, 1, 17 p., 276.Research output: Contribution to journal › Article › Scientific › peer-review
Open AccessFile -
Tumor cell FAP orchestrates EMT and immune suppression in aggressive localized ccRCC
Pellinen, T., Luomala, L., Mattila, K. E., Hemmes, A., Välimäki, K., Arjama, M., Brück, O., Paavolainen, L., Kankkunen, E., Nisen, H., Järvinen, P., Castillon, L., Vanharanta, S., Vainio, P., Kallioniemi, O., Jaakkola, P. M. & Mirtti, T., 2026, In: Theranostics. 16, 7, p. 3246-3262 17 p.Research output: Contribution to journal › Article › Scientific › peer-review
Open AccessFile -
Artificial intelligence aided serum protein electrophoresis analysis of Finnish patient samples: Retrospective validation
Lahtiharju, T., Paavolainen, L., Suvisaari, J., Nokelainen, P., Rotgers, E., Anttonen, M. & Itkonen, O., 1 Feb 2025, In: Clinica Chimica Acta. 567, 7 p., 120086.Research output: Contribution to journal › Article › Scientific › peer-review
Open AccessFile -
Evaluating feature extraction in ovarian cancer cell line co-cultures using deep neural networks
Sharma, O., Gudoityte, G., Minozada, R., Kallioniemi, O. P., Turkki, R., Paavolainen, L. & Seashore-Ludlow, B., 25 Feb 2025, In: Communications Biology. 8, 1, 11 p., 303.Research output: Contribution to journal › Article › Scientific › peer-review
Open AccessFile
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PanCanPro: Decoding pan-cancer tumor microenvironment with integrative single-cell spatial profiling
Paavolainen, L. (Project manager), Atarsaikhan, G. (Participant) & Mahdavi, F. (Participant)
01/09/2024 → 31/08/2028
Project: Research Council of Finland: Academy Project
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Uncovering patterns in cancer cells with visual representation learning
Paavolainen, L. (Project manager), Atarsaikhan, G. (Participant), Bourgogne, E. (Participant) & Mogollon Figueroa, I. (Participant)
01/09/2024 → 31/08/2026
Project: Research Council of Finland: Academy Research Fellow's research expenses
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iCAN-DIP: AI-driven deep image-based profiling of pan-cancer tumor microenvironment
Atarsaikhan, G. (Participant) & Paavolainen, L. (Principal Investigator)
01/01/2023 → 31/12/2026
Project: Research project
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Uncovering patterns in cancer cells with visual representation learning
Paavolainen, L. (Project manager), Atarsaikhan, G. (Participant), Mogollon Figueroa, I. (Participant) & Sanian, M. V. (Participant)
01/09/2021 → 31/08/2026
Project: Research project
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FIRI Lassi Paavolainen
Paavolainen, L. (Project manager), Harjuniemi, M. M. (Participant), Hassinen, M. V. (Participant), Kesälä, E. (Participant), Koljonen, N.-V. (Participant), Metsä, P. (Participant), Niklander, T. M. (Participant), Rantanen, R. J. (Participant), Saarinen, M. J. (Participant), Siidirätsep, A. (Participant), Silander, J.-M. (Participant) & Syrjänen, S. J. (Participant)
Suomen Akatemia Projektilaskutus
01/01/2023 → 31/12/2025
Project: Research Council of Finland: Research infrastructure
Datasets
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Image-based profiling of healthy donor immune cells with Blood Cell Painting
Paavolainen, L. (Creator), Högel-Starck, C. S. P. (Creator), Timonen, V. A. (Creator), Atarsaikhan, G. (Creator), Mogollon Figueroa, I. (Creator), Polso, M. M. M. (Creator), Hassinen, A. (Creator), Pietiäinen, V. (Creator) & Pitkänen, E. (Creator), European Bioinformatics Institute, 14 Oct 2025
DOI: 10.6019/S-BIAD2344
Dataset
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Image-based and machine learning-guided multiplexed serology test for SARS-CoV-2
Paavolainen, L. (Creator), Hassinen, A. (Creator), Polso, M. M. M. (Creator), Pietiäinen, V. (Creator) & Kemmer, I. (Editor), European Bioinformatics Institute, 1 Apr 2025
Dataset
Activities
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CytoData 2025
Paavolainen, L. (Attendee)
20 Nov 2025 → 21 Nov 2025Activity: Participating in or organising an event types › Organisation and participation in conferences, workshops, courses, seminars
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Identifying New Drug Targets and Immune Strategies for Pediatric Cancers through Tumor Profiling and Biopsy Studies
Paavolainen, L. (Supervisor)
11 Sept 2025 → …Activity: Examination types › Supervisor or co-supervisor of doctoral thesis
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4th BioImage Informatics Finland Network Symposium (BIIF)
Paavolainen, L. (Member of organizing committee)
22 May 2025 → 23 May 2025Activity: Participating in or organising an event types › Organisation and participation in conferences, workshops, courses, seminars
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Image-based profiling of tissues and cells using self-supervised machine learning
Paavolainen, L. (Invited speaker)
12 Dec 2025Activity: Talk or presentation types › Invited talk
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EMBL Partnership Conference
Paavolainen, L. (Attendee)
31 Mar 2025 → 2 Apr 2025Activity: Participating in or organising an event types › Organisation and participation in conferences, workshops, courses, seminars