Research output per year
Research output per year
Personal profile
Description of research and teaching
I am a postdoctoral researcher at the Department of Computer Science. My research interests include string algorithms and bioinformatics. Currently I work especially with problems related to genome assembly.
Fields of Science
- 113 Computer and information sciences
- String algorithms
- Bioinformatics
International and National Collaboration
Publications and projects within past five years.
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Accurate self-correction of errors in long reads using de Bruijn graphs
Salmela, L., Walve, R., Rivals, E. & Ukkonen, E., 15 Mar 2017, In: Bioinformatics. 33, 6, p. 799-806 8 p.Research output: Contribution to journal › Article › Scientific › peer-review
Open AccessFile -
Disentangled long-read de Bruijn graphs via optical maps
Alipahani, B., Salmela, L., Puglisi, S. J., Muggli, M. & Boucher, C., 2017, 17th International Workshop on Algorithms in Bioinformatics, WABI 2017. Schwartz, R. & Reinert, K. (eds.). Dagstuhl: Schloss Dagstuhl - Leibniz-Zentrum für Informatik, p. 1:1-1:14 14 p. (Leibniz International Proceedings in Informatics; vol. 88).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Scientific › peer-review
Open AccessFile -
Variant genotyping with gap filling
Walve, R., Salmela, L. & Mäkinen, V., 8 Sept 2017, In: PLoS One. 12, 9, 12 p., e0184608.Research output: Contribution to journal › Article › Scientific › peer-review
Open AccessFile -
Colib'read on galaxy: a tools suite dedicated to biological information extraction from raw NGS reads
Le Bras, Y., Collin, O., Monjeaud, C., Lacroix, V., Rivals, E., Lemaitre, C., Miele, V., Sacomoto, G., Marchet, C., Cazaux, B., El Aabidine, A. Z., Salmela, L., Alves-Carvalho, S., Andrieux, A., Uricaru, R. & Peterlongo, P., 11 Feb 2016, In: GigaScience. 5, 14 p., 9.Research output: Contribution to journal › Article › Scientific › peer-review
Open AccessFile -
Gap Filling as Exact Path Length Problem
Salmela, L., Sahlin, K., Mäkinen, V. & Tomescu, A. I., 9 May 2016, In: Journal of Computational Biology. 23, 5, p. 347-361 15 p.Research output: Contribution to journal › Article › Scientific › peer-review
Open AccessFile
Prizes
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Award for best paper submitted to HiTSeq 2010
Salmela, L. (Recipient), 10 Jul 2010
Prize: Prizes and awards
Activities
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ACM Conference on Bioinformatics, Computational Biology, and Health Informatics (Event)
Salmela, L. (Programme Committee Member)
20 Aug 2017 → 23 Aug 2017Activity: Publication peer-review and editorial work types › Peer review of manuscripts
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University of Florida
Salmela, L. (Visiting researcher)
24 Aug 2017 → 1 Sept 2017Activity: Visiting an external institution types › Academic visit to other institution
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International Workshop on Combinatorial Algorithms
Salmela, L. (Chair of organizing committee)
17 Aug 2016 → 19 Aug 2016Activity: Participating in or organising an event types › Organisation and participation in conferences, workshops, courses, seminars
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International Symposium on String Processing and Information Retrieval (Event)
Salmela, L. (Programme Committee Member)
2016 → …Activity: Publication peer-review and editorial work types › Peer review of manuscripts
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Colorado State University
Salmela, L. (Visiting researcher)
23 Apr 2016 → 5 May 2016Activity: Visiting an external institution types › Academic visit to other institution