No photo of Liisa Holm
  • Finland

  • PL 56 (Viikinkaari 5)

    00014

    Finland

20032021
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Personal profile

Fields of Science

  • 1184 Genetics, developmental biology, physiology

International and National Collaboration Publications and projects within past five years.

Publications 2003 2019

DALI and the persistence of protein shape

Holm, L., 13 Nov 2019, In : Protein Science. 13 p.

Research output: Contribution to journalArticleScientificpeer-review

The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens

Zhou, N., Jiang, Y., Bergquist, T. R., Lee, A. J., Kacsoh, B. Z., Crocker, A. W., Lewis, K. A., Georghiou, G., Nguyen, H. N., Hamid, M. N., Davis, L., Dogan, T., Atalay, V., Rifaioglu, A. S., Dalkiran, A., Atalay, R. C., Zhang, C., Hurto, R. L., Freddolino, P. L., Zhang, Y. & 147 others, Bhat, P., Supek, F., Fernandez, J. M., Gemovic, B., Perovic, V. R., Davidovic, R. S., Sumonja, N., Veljkovic, N., Asgari, E., Mofrad, M. R. K., Profiti, G., Savojardo, C., Martelli, P. L., Casadio, R., Boecker, F., Schoof, H., Kahanda, I., Thurlby, N., McHardy, A. C., Renaux, A., Saidi, R., Gough, J., Freitas, A. A., Antczak, M., Fabris, F., Wass, M. N., Hou, J., Cheng, J., Wang, Z., Romero, A. E., Paccanaro, A., Yang, H., Goldberg, T., Zhao, C., Holm, L., Törönen, P., Medlar, A. J., Zosa, E., Borukhov, I., Novikov, I., Wilkins, A., Lichtarge, O., Chi, P-H., Tseng, W-C., Linial, M., Rose, P. W., Dessimoz, C., Vidulin, V., Dzeroski, S., Sillitoe, I., Das, S., Lees, J. G., Jones, D. T., Wan, C., Cozzetto, D., Fa, R., Torres, M., Vesztrocy, A. W., Rodriguez, J. M., Tress, M. L., Frasca, M., Notaro, M., Grossi, G., Petrini, A., Re, M., Valentini, G., Mesiti, M., Roche, D. B., Reeb, J., Ritchie, D. W., Aridhi, S., Alborzi, S. Z., Devignes, M-D., Koo, D. C. E., Bonneau, R., Gligorijevic, V., Barot, M., Fang, H., Toppo, S., Lavezzo, E., Falda, M., Berselli, M., Tosatto, S. C. E., Carraro, M., Piovesan, D., Rehman, H. U., Mao, Q., Zhang, S., Vucetic, S., Black, G. S., Jo, D., Suh, E., Dayton, J. B., Larsen, D. J., Omdahl, A. R., McGuffin, L. J., Brackenridge, D. A., Babbitt, P. C., Yunes, J. M., Fontana, P., Zhang, F., Zhu, S., You, R., Zhang, Z., Dai, S., Yao, S., Tian, W., Cao, R., Chandler, C., Amezola, M., Johnson, D., Chang, J-M., Liao, W-H., Liu, Y-W., Pascarelli, S., Frank, Y., Hoehndorf, R., Kulmanov, M., Boudellioua, I., Politano, G., Di Carlo, S., Benso, A., Hakala, K., Ginter, F., Mehryary, F., Kaewphan, S., Bjorne, J., Moen, H., Tolvanen, M. E. E., Salakoski, T., Kihara, D., Jain, A., Smuc, T., Altenhoff, A., Ben-Hur, A., Rost, B., Brenner, S. E., Orengo, C. A., Jeffery, C. J., Bosco, G., Hogan, D. A., Martin, M. J., O'Donovan, C., Mooney, S. D., Greene, C. S., Radivojac, P. & Friedberg, I., 19 Nov 2019, In : Genome Biology. 20, 1, 23 p., 244.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
File

Π-cyc: A Reference-free SNP Discovery Application using Parallel Graph Search

Younsi, R., Tang, J. & Holm, L. U. T., 29 Jan 2019, (Unpublished) In : arXiv.org .

Research output: Contribution to journalArticleGeneral public

File

AAI-profiler: fast proteome-wide exploratory analysis reveals taxonomic identity, misclassification and contamination

Medlar, A. J., Törönen, P. & Holm, L., 2 Jul 2018, In : Nucleic Acids Research. 46, W1, p. W479-W485 7 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
File

BARCOSEL: a tool for selecting an optimal barcode set for high-throughput sequencing

Somervuo, P., Koskinen, P., Mei, P., Holm, L., Auvinen, P. & Paulin, L., 5 Jul 2018, In : BMC Bioinformatics. 19, 257, 6 p., 257.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
File

Projects 2009 2021

Activities 2007 2011

  • 4 Membership or other role in national/international committee, council, board
  • 1 Membership or other role in review committee
  • 1 Academic visit to other institution

Suomen Akatemia (External organisation)

Liisa Holm (Chair)
14 Oct 2011

Activity: Membership typesMembership or other role in national/international committee, council, board

Science Foundation Ireland (External organisation)

Liisa Holm (Member)
16 Dec 2011

Activity: Membership typesMembership or other role in review committee

Tieteellinen valtuuskunta (External organisation)

Liisa Holm (Member)
1 Jan 201130 Dec 2011

Activity: Membership typesMembership or other role in national/international committee, council, board

Knut och Alice Wallenbergs stiftelse (External organisation)

Liisa Holm (Expert)
12 Dec 2011

Activity: Membership typesMembership or other role in national/international committee, council, board

ESF (External organisation)

Liisa Holm (Member)
20092012

Activity: Membership typesMembership or other role in national/international committee, council, board