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Liisa Holm

  • Finland

  • PL 56 (Viikinkaari 5)

    00014

    Finland

20032020

Research output per year

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Personal profile

Fields of Science

  • 1184 Genetics, developmental biology, physiology

International and National Collaboration Publications and projects within past five years.

Publications

DALI and the persistence of protein shape

Holm, L., Jan 2020, In : Protein Science. 29, 1, p. 128-140 13 p.

Research output: Contribution to journal › Article › Scientific › peer-review

Open Access

Novel NGS Pipeline for Virus Discovery from a Wide Spectrum of Hosts and Sample Types

Pljusnin, I., Kant, R., Jääskeläinen, A. J., Sironen, T., Holm, L., Vapalahti, O. & Smura, T., 8 May 2020, (Submitted) In : bioRxiv : the preprint server for biology .

Research output: Contribution to journal › Article › Scientific

Benchmarking fold detection by DaliLite v.5

Holm, L., 15 Dec 2019, In : Bioinformatics. 35, 24, p. 5326-5327 2 p.

Research output: Contribution to journal › Article › Scientific › peer-review

Novel comparison of evaluation metrics for gene ontology classifiers reveals drastic performance differences

Plyusnin, I., Holm, L. & Toronen, P., Nov 2019, In : PLoS Computational Biology. 15, 11, 27 p., 1007419.

Research output: Contribution to journal › Article › Scientific › peer-review

Open Access
File

The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens

Zhou, N., Jiang, Y., Bergquist, T. R., Lee, A. J., Kacsoh, B. Z., Crocker, A. W., Lewis, K. A., Georghiou, G., Nguyen, H. N., Hamid, M. N., Davis, L., Dogan, T., Atalay, V., Rifaioglu, A. S., Dalkiran, A., Atalay, R. C., Zhang, C., Hurto, R. L., Freddolino, P. L., Zhang, Y. & 147 others, Bhat, P., Supek, F., Fernandez, J. M., Gemovic, B., Perovic, V. R., Davidovic, R. S., Sumonja, N., Veljkovic, N., Asgari, E., Mofrad, M. R. K., Profiti, G., Savojardo, C., Martelli, P. L., Casadio, R., Boecker, F., Schoof, H., Kahanda, I., Thurlby, N., McHardy, A. C., Renaux, A., Saidi, R., Gough, J., Freitas, A. A., Antczak, M., Fabris, F., Wass, M. N., Hou, J., Cheng, J., Wang, Z., Romero, A. E., Paccanaro, A., Yang, H., Goldberg, T., Zhao, C., Holm, L., Törönen, P., Medlar, A. J., Zosa, E., Borukhov, I., Novikov, I., Wilkins, A., Lichtarge, O., Chi, P-H., Tseng, W-C., Linial, M., Rose, P. W., Dessimoz, C., Vidulin, V., Dzeroski, S., Sillitoe, I., Das, S., Lees, J. G., Jones, D. T., Wan, C., Cozzetto, D., Fa, R., Torres, M., Vesztrocy, A. W., Rodriguez, J. M., Tress, M. L., Frasca, M., Notaro, M., Grossi, G., Petrini, A., Re, M., Valentini, G., Mesiti, M., Roche, D. B., Reeb, J., Ritchie, D. W., Aridhi, S., Alborzi, S. Z., Devignes, M-D., Koo, D. C. E., Bonneau, R., Gligorijevic, V., Barot, M., Fang, H., Toppo, S., Lavezzo, E., Falda, M., Berselli, M., Tosatto, S. C. E., Carraro, M., Piovesan, D., Rehman, H. U., Mao, Q., Zhang, S., Vucetic, S., Black, G. S., Jo, D., Suh, E., Dayton, J. B., Larsen, D. J., Omdahl, A. R., McGuffin, L. J., Brackenridge, D. A., Babbitt, P. C., Yunes, J. M., Fontana, P., Zhang, F., Zhu, S., You, R., Zhang, Z., Dai, S., Yao, S., Tian, W., Cao, R., Chandler, C., Amezola, M., Johnson, D., Chang, J-M., Liao, W-H., Liu, Y-W., Pascarelli, S., Frank, Y., Hoehndorf, R., Kulmanov, M., Boudellioua, I., Politano, G., Di Carlo, S., Benso, A., Hakala, K., Ginter, F., Mehryary, F., Kaewphan, S., Bjorne, J., Moen, H., Tolvanen, M. E. E., Salakoski, T., Kihara, D., Jain, A., Smuc, T., Altenhoff, A., Ben-Hur, A., Rost, B., Brenner, S. E., Orengo, C. A., Jeffery, C. J., Bosco, G., Hogan, D. A., Martin, M. J., O'Donovan, C., Mooney, S. D., Greene, C. S., Radivojac, P. & Friedberg, I., 19 Nov 2019, In : Genome Biology. 20, 1, 23 p., 244.

Research output: Contribution to journal › Article › Scientific › peer-review

Open Access
File

Projects

HiLIFE Grand Challenge "Combatting microbial drug resistance"

Hiltunen, T. & Holm, L.

01/10/2018 → 30/09/2021

Project: Research project

HiLIFE Grand Challenge: Combatting Antimicrobial Drug Resistance

Virta, M. & Holm, L.

01/10/2018 → 31/12/2021

Project: Research project

HiLIFE Grand Challenge consortium "Combatting antimicrobial resistance"

Hiltunen, T. & Holm, L.

01/10/2018 → 30/09/2021

Project: Other project

Bugsy: Leikkausalueen patogeenien tunnistus metagenomiikan menetelmiä hyödyntäen (Bugsy)

Kankainen, M., Holm, L., Kankuri, E., Varmanen, P., Savijoki, K., Ojala, T., Medlar, A. & Vuola, J.

01/09/2015 → 31/08/2019

Project: Research project

Glanville fritillary butterfly genomics and genetics

Lehtonen, R., Ahola, V., Somervuo, P. J., Frilander, M., Auvinen, P., Paulin, L. & Holm, L.

02/02/2009 → 30/03/2013

Project: Research project

Activities

  • 4 Membership or other role in national/international committee, council, board
  • 1 Membership or other role in review committee
  • 1 Academic visit to other institution

Science Foundation Ireland (External organisation)

Liisa Holm (Member)
16 Dec 2011

Activity: Membership types › Membership or other role in review committee

Tieteellinen valtuuskunta (External organisation)

Liisa Holm (Member)
1 Jan 2011 → 30 Dec 2011

Activity: Membership types › Membership or other role in national/international committee, council, board

Knut och Alice Wallenbergs stiftelse (External organisation)

Liisa Holm (Expert)
12 Dec 2011

Activity: Membership types › Membership or other role in national/international committee, council, board

Suomen Akatemia (External organisation)

Liisa Holm (Chair)
14 Oct 2011

Activity: Membership types › Membership or other role in national/international committee, council, board

ESF (External organisation)

Liisa Holm (Member)
2009 → 2012

Activity: Membership types › Membership or other role in national/international committee, council, board