Photo of Mirko Rossi

Mirko Rossi

Adjunct Professor in Zoonotic Bacteriology, Associate Professor (Tenure Track) in Environmental Hygiene

  • PL 66 (Agnes Sjöbergin katu 2), B426

    HELSINGIN YLIOPISTO

    Finland

20072019
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Publications 2007 2019

2019

Characterization of the Campylobacter jejuni diversity in small mammals in Finland

Kivistö, R., Simola, M., Tikkanen, J., Jaakkonen, A., Hakkinen, M., Huitu, O., Niemimaa, J., Henttonen, H. & Rossi, M., 2019.

Research output: Conference materialsPosterResearch

Genetics behind the Biosynthesis of Nonulosonic Acid-Containing Lipooligosaccharides in Campylobacter coli

Kolehmainen, A., Rossi, M., Stupak, J., Li, J., Gilbert, M. & Wakarchuk, W., Apr 2019, In : Journal of Bacteriology. 201, 8, 11 p., 00759-18.

Research output: Contribution to journalArticleScientificpeer-review

Longitudinal Study of Shiga Toxin-Producing Escherichia coli and Campylobacter jejuni on Finnish Dairy Farms and in Raw Milk

Jaakkonen, A., Castro, H., Hallanvuo, S., Ranta, J., Rossi, M., Isidro, J., Lindström, M. & Hakkinen, M., Apr 2019, In : Applied and Environmental Microbiology. 85, 7, 17 p., e02910-18.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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Macroevolution of gastric Helicobacter species unveils interspecies admixture and time of divergence (vol 12, pg 2518, 2018)

Smet, A., Yahara, K., Rossi, M., Tay, A., Backert, S., Ensser, A., Fox, J. G., Flahou, B., Ducatelle, R., Haesebrouck, F. & Corander, J., Jul 2019, In : ISME Journal. 13, 7, p. 1890-1890 1 p.

Research output: Contribution to journalArticleScientificpeer-review

Population genetics and characterization of Campylobacter jejuni isolates from western jackdaws and game birds in Finland

Kovanen, S., Rossi, M., Pohja-Mykrä, M., Nieminen, T., Raunio-Saarnisto, M., Sauvala, M., Fredriksson-Ahomaa, M., Hänninen, M-L. & Kivistö, R. I., Feb 2019, In : Applied and Environmental Microbiology. 85, 4, 16 p., UNSP e02365-18.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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2018

A primer on microbial bioinformatics for nonbioinformaticians

Carrico, J. A., Rossi, M., Moran-Gilad, J., Van Domselaar, G. & Ramirez, M., Apr 2018, In : Clinical Microbiology and Infection. 24, 4, p. 342-349 8 p.

Research output: Contribution to journalReview ArticleScientificpeer-review

chewBBACA: A complete suite for gene-by-gene schema creation and strain identification

Silva, M., Machado, M. P., Silva, D. N., Rossi, M., Moran-Gilad, J., Santos, S., Ramirez, M. & Carrico, J. A., Mar 2018, In : Microbial Genomics. 4, 3, 7 p., 000166.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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Evidence for a primate origin of zoonotic Helicobacter suis colonizing domesticated pigs

Flahou, B., Rossi, M., Bakker, J., Langermans, J. A. M., Heuvelman, E., Solnick, J. V., Martin, M. E., O'Rourke, J., Le Duc Ngoan, Xuan Hoa, N., Nakamura, M., Overby, A., Matsui, H., Ota, H., Matsumoto, T., Foss, D. L., Kopta, L. A., Omotosho, O., Franciosini, M. P., Proietti, P. C. & 13 othersGuo, A., Liu, H., Borilova, G., Bracarense, A. P., Linden, S. K., De Bruyckere, S., Zhang, G., De Witte, C., Smet, A., Pasmans, F., Ducatelle, R., Corander, J. & Haesebrouck, F., Jan 2018, In : ISME Journal. 12, 1, p. 77-86 10 p.

Research output: Contribution to journalArticleScientificpeer-review

Genome-wide identification of geographical segregated genetic markers in Salmonella enterica serovar Typhimurium variant 4,[5],12:i:-

Palma, F., Manfreda, G., Silva, M., Parisi, A., Barker, D. O. R., Taboada, E. N., Pasquali, F. & Rossi, M., 15 Oct 2018, In : Scientific Reports. 8, 12 p., 15251.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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INNUENDO: A cross-sectoral platform for the integration of genomics in the surveillance of food-borne pathogens

Llarena, A-K., Ribeiro-Gonçalves, B. F., Nuno Silva, D., Halkilahti, J., Machado, M. P., Da Silva, M. S., Jaakkonen, A., Isidro, J., Hämäläinen, C., Joenperä, J., Borges, V., Viera, L., Gomes, J. P., Correia, C., Lunden, J., Laukkanen-Ninios, R., Fredriksson-Ahomaa, M., Bikandi, J., Millan, R. S., Martinez-Ballesteros, I. & 11 othersLaorden, L., Mäesaar, M., Grantina-Ievina, L., Hilbert, F., Garaizar, J., Oleastro, M., Nevas, M., Salmenlinna, S., Hakkinen, M., Carriço, J. A. & Rossi, M., 26 Nov 2018, In : EFSA Supporting Publications. 15, 11, p. 1498E 142 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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In silico proteomic and phylogenetic analysis of the outer membrane protein repertoire of gastric Helicobacter species

Bauwens, E., Joosten, M., Taganna, J., Rossi, M., Debraekeleer, A., Tay, A., Peters, F., Backert, S., Fox, J., Ducatelle, R., Remaut, H., Haesebrouck, F. & Smet, A., 18 Oct 2018, In : Scientific Reports. 8, 14 p., 15453.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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Macroevolution of gastric Helicobacter species unveils interspecies admixture and time of divergence

Smet, A., Yahara, K., Rossi, M., Tay, A., Backert, S., Armin, E., Fox, J. G., Flahou, B., Ducatelle, R., Haesebrouck, F. & Corander, J., 25 Jun 2018, In : ISME Journal. 12, 10, p. 2518-2531 14 p.

Research output: Contribution to journalArticleScientificpeer-review

Origin, evolution, and distribution of the molecular machinery for biosynthesis of sialylated lipooligosaccharide structures in Campylobacter coli

Culebro, A., Machado, M. P., Carrico, J. A. & Rossi, M., 14 Feb 2018, In : Scientific Reports. 8, 9 p., 3028.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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2017

Campylobacter jejuni survival in a poultry processing plant environment

Garcia-Sanchez, L., Melero, B., Jaime, I., Hanninen, M-L., Rossi, M. & Rovira, J., Aug 2017, In : Food Microbiology. 65, p. 185-192 8 p.

Research output: Contribution to journalArticleScientificpeer-review

Complete genome sequence of the Campylobacter cuniculorum type strain LMG 24588

Miller, W. G., Yee, E., Revez, J., Bono, J. L. & Rossi, M., 2017, In : Genome Announcements. 5, 24, 2 p., e00543-17.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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Complete genome sequence of the hippuricase-positive Campylobacter avium Type 5 LMG 24591

Miller, W. G., Chapman, M. H., Yee, E., Revez, J., Bono, J. L. & Rossi, M., 2017, In : Genome Announcements. 5, 43, 2 p., e01221-17.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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The Helicobacter cinaedi antigen CAIP participates in atherosclerotic inflammation by promoting the differentiation of macrophages in foam cells

D'Elios, M. M., Vallese, F., Capitani, N., Benagiano, M., Bernardini, M. L., Rossi, M., Rossi, G. P., Ferrari, M., Baldari, C. T., Zanotti, G., de Bernard, M. & Codolo, G., 11 Jan 2017, In : Scientific Reports. 7, 14 p., 40515.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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Whole-Genome Sequencing in Epidemiology of Campylobacter jejuni Infections

Llarena, A-K., Taboada, E. & Rossi, M., May 2017, In : Journal of Clinical Microbiology. 55, 5, p. 1269-1275 7 p.

Research output: Contribution to journalReview ArticleScientificpeer-review

Open Access
2016

Chondroitinase AC: a host-associated genetic feature of Helicobacter bizzozeronii

Namburi, R. B., Berteau, O., Spillmann, D. & Rossi, M., 2016, In : Veterinary Microbiology. 186, p. 21-27 7 p.

Research output: Contribution to journalArticleScientificpeer-review

Divergence between the highly virulent zoonotic pathogen Helicobacter heilmannii and its closest relative, the low-virulence “Helicobacter ailurogastricus” sp. nov.

Joosten, M., Lindén, S., Rossi, M., Chin Yen Tay, A., Skoog, E., Padra, M., Peters, F., Perkins, T., Vandamme, P., Van Nieuwerburgh, F., D'Herde, K., Van den Broeck, W., Flahou, B., Deforce, D., Ducatelle, R., Marshall, B., Haesebrouck, F. & Smet, A., Jan 2016, In : Infection and Immunity. 84, 1, p. 293-306 14 p.

Research output: Contribution to journalArticleScientificpeer-review

Functional genomics in Campylobacter coli identified a novel streptomycin resistance gene located in a hypervariable genomic region

Olkkola, S., Culebro Escandon y Perez, A., Juntunen, P., Hänninen, M-L. & Rossi, M., Jul 2016, In : Microbiology. 162, p. 1157-1166 10 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access

Large Sequence Diversity within the Biosynthesis Locus and Common Biochemical Features of Campylobacter coli Lipooligosaccharides

Culebro, A., Revez, J., Pascoe, B., Friedmann, Y., Hitchings, M. D., Stupak, J., Sheppard, S. K., Li, J. & Rossi, M., Oct 2016, In : Journal of Bacteriology. 198, 20, p. 2829-2840 12 p.

Research output: Contribution to journalArticleScientificpeer-review

Monomorphic genotypes within a generalist lineage of Campylobacter jejuni show signs of global dispersion

Llarena, A-K., Zhang, J., Vehkala, M., Välimäki, N., Hakkinen, M., Hänninen, M-L., Roasto, M., Mäesaar, M., Taboada, E., Barker, D., Garofolo, G., Cammà, C., Di Giannatale, E., Corander, J. & Rossi, M., 1 Oct 2016, In : Microbial Genomics. 2, 14 p.

Research output: Contribution to journalArticleScientificpeer-review

The Helicobacter heilmannii hofE and hofF Genes are Essential for Colonization of the Gastric Mucosa and Play a Role in IL-1-Induced Gastric MUC13 Expression

Cheng, L., Rossi, M., Sara, L., Medea, P., Caroline, B., Eva, B., Myrthe, J., Bram, F., Wim, V. D. B., Richard, D., Freddy, H. & Annemieke, S., Dec 2016, In : Helicobacter (Oxford). 21, 6, p. 504-522 19 p.

Research output: Contribution to journalArticleScientificpeer-review

Tracing isolates from domestic human Campylobacter jejuni infections to chicken slaughter batches and swimming water using whole-genome multilocus sequence typing

Kovanen, S., Kivisto, R., Llarena, A-K., Zhang, J., Karkkainen, U-M., Tuuminen, T., Uksila, J., Hakkinen, M., Rossi, M. & Hanninen, M-L., 2 Jun 2016, In : International Journal of Food Microbiology. 226, p. 53-60 8 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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2015

Antimicrobial resistance and Campylobacter jejuni and C. coli

Rossi, M., Olkkola, S., Roasto, M., Kivistö, R. & Hänninen, M-L., 2015, Antimicrobial Resistance and Food Safety: Methods and Techniques. Chen, C-Y., Yan, X. & Jackson, C. R. (eds.). London, UK: Elsevier Academic Press, p. 55-75 21 p.

Research output: Chapter in Book/Report/Conference proceedingChapterScientificpeer-review

Characterization of the Campylobacter jejuni population in the barnacle geese reservoir

Llarena, A. -K., Skarp-de Haan, C. P. A., Rossi, M. & Hänninen, M. -L., May 2015, In : Zoonoses and Public Health. 62, 3, p. 209-221 13 p.

Research output: Contribution to journalArticleScientificpeer-review

Refinement of Whole-Genome Multilocus Sequence Typing Analysis by Addressing Gene Paralogy

Zhang, J., Halkilahti, J., Hänninen, M-L. & Rossi, M., May 2015, In : Journal of Clinical Microbiology. 53, 5, p. 1765-1767 3 p.

Research output: Contribution to journalArticleScientificpeer-review

Sialylation of Helicobacter bizzozeronii lipopolysaccharides modulates Toll-like receptor (TLR) 2 mediated response

Kondadi, P. K., Revez, J., Hänninen, M-L. & Rossi, M., 21 Jan 2015, In : Veterinary Research. 46, 7 p., 4.

Research output: Contribution to journalArticleScientificpeer-review

2014

A combination of MLST and CRISPR typing reveals dominant Campylobacter jejuni types in organically farmed laying hens

Kovanen, S. M., Kivistö, R. I., Rossi, M. & Hänninen, M. -L., Jul 2014, In : Journal of Applied Microbiology. 117, 1, p. 249-257 9 p.

Research output: Contribution to journalArticleScientificpeer-review

Comparative genomics of unintrogressed Campylobacter coli clades 2 and 3

Skarp-de Haan, C. P. A., Culebro, A., Schott, T., Revez, J., Schweda, E. K. H., Hänninen, M-L. & Rossi, M., 13 Feb 2014, In : BMC Genomics. 15, 14 p., 129.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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Diversity of zoonotic enterohepatic Helicobacter species and detection of a putative novel gastric Helicobacter species in wild and wild-born captive chimpanzees and western lowland gorillas

Flahou, B., Modry, D., Pomajbikova, K., Petrzelkova, K. J., Smet, A., Ducatelle, R., Pasmans, F., Sa, R. M., Todd, A., Hashimoto, C., Mulama, M., Kiang, J., Rossi, M. & Haesebrouck, F., 7 Nov 2014, In : Veterinary Microbiology. 174, 1-2, p. 186-194 9 p.

Research output: Contribution to journalArticleScientificpeer-review

Evolution and comparative genomics of Campylobacter jejuni ST-677 clonal complex

Kivistö, R. I., Kovanen, S., Skarp-de Haan, A., Schott, T., Rahkio, M., Rossi, M. & Hänninen, M-L., Sep 2014, In : Genome Biology and Evolution. 6, 9, p. 2424-2438

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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Genome analysis of Campylobacter jejuni strains isolated from a waterborne outbreak

Revez, J., Llarena, A-K., Schott, T., Kuusi, M., Hakkinen, M., Kivistö, R., Hänninen, M-L. & Rossi, M., 8 Sep 2014, In : BMC Genomics. 15, 8 p., 768.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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Genomic variation between Campylobacter jejuni isolates associated with milk-borne-disease outbreaks

Revez, J., Zhang, J., Schott, T., Kivistö, R., Rossi, M. & Hänninen, M-L., 2014, In : Journal of Clinical Microbiology. 52, 8, p. 2782-2786 5 p.

Research output: Contribution to journalArticleScientificpeer-review

Multilocus Sequence Typing (MLST) and Whole-Genome MLST of Campylobacter jejuni Isolates from Human Infections in Three Districts during a Seasonal Peak in Finland

Kovanen, S. M., Kivistö, R. I., Rossi, M., Schott, T., Kärkkäinen, U-M., Tuuminen, T., Uksila, J., Rautelin, H. & Hänninen, M-L., Dec 2014, In : Journal of Clinical Microbiology. 52, 12, p. 4147-4154 8 p.

Research output: Contribution to journalArticleScientificpeer-review

Pest control

Rossi, M. & Andreucci, F., Aug 2014, Meat Inspection and Control in the Slaughterhouse. Ninios, T., Lundén, J., Korkeala, H. & Fredriksson-Ahomaa, M. (eds.). Chichester, West Sussex: John Wiley & Sons Ltd. , p. 473-483 11 p.

Research output: Chapter in Book/Report/Conference proceedingChapterScientificpeer-review

2013

Contingency nature of Helicobacter bizzozeronii oxygen-insensitive NAD(P)H-nitroreductase (HBZC1_00960) and its role in metronidazole resistance

Kondadi, P. K., Pacini, C., Revez, J., Hänninen, M-L. & Rossi, M., 2013, In : Veterinary Research. 44, p. art. 56 7 p.

Research output: Contribution to journalArticleScientificpeer-review

Genetic heterogeneity of Campylobacter jejuni NCTC 11168 upon human infection

Revez, J., Schott, T., Llarena, A-K., Rossi, M. & Hänninen, M-L., 2013, In : Infection, genetics and evolution. 16, p. 305-309 5 p.

Research output: Contribution to journalArticleScientificpeer-review

Occurrence of ε-proteobacterial species in rabbits (Oryctolagus cuniculus) reared in intensive and rural farms

Revez, J., Rossi, M., Piva, S., Florio, D., Lucchi, A., Parisi, A., Manfreda, G. & Zanoni, R. G., 2013, In : Veterinary Microbiology. 162, 1, p. 288-292 5 p.

Research output: Contribution to journalArticleScientificpeer-review

Sequence divergence and conservation in genomes of Helicobacter cetorum strains from a dolphin and a whale

Kersulyte, D., Rossi, M. & Berg, D. E., Dec 2013, In : PLoS One. 8, 12, 15 p., e83177.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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2012

Complete genome sequence of a variant of Campylobacter jejuni NCTC 11168

Revez, J., Schott, T., Rossi, M. & Hänninen, M-L., 2012, In : Journal of Bacteriology. 194, 22, p. 6298-6299 2 p.

Research output: Contribution to journalArticleScientificpeer-review

Evidence for conserved function of γ–glutamyltranspeptidase in Helicobacter genus

Rossi, M., Bolz, C., Revez, J., Javed, S., El-Najjar, N., Anderl, F., Hyytiäinen, H., Vuorela, P., Gerhard, M. & Hänninen, M-L., 2012, In : PLoS One. 7, 2, p. e30543 13 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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Helicobacter spp. Other than H. pylori

Rossi, M. & Hänninen, M-L., Sep 2012, In : Helicobacter (Oxford). 17, Suppl 1, p. 56-61 6 p.

Research output: Contribution to journalArticleScientificpeer-review

Identification and characterization of a lipopolysaccharide α,2,3-sialyltransferase from the human pathogen Helicobacter bizzozeronii

Kondadi, P. K., Rossi, M., Twelkmeyer, B., Schur, M. J., Li, J., Schott, T., Paulin, L., Auvinen, P., Hänninen, M-L., Schweda, E. K. H. & Wakarchuk, W., 2012, In : Journal of Bacteriology. 194, 10, p. 2540-2550 11 p.

Research output: Contribution to journalArticleScientificpeer-review

Microevolution of a zoonotic Helicobacter population colonizing the stomach of a human host before and after failed treatment

Schott, T., Kondadi, P. K., Hänninen, M-L. & Rossi, M., 2012, In : Genome Biology and Evolution. 4, 12, p. 1310-1315 6 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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Finnish Campylobacter jejuni Strains of Multilocus Sequence Type ST-22 Complex Have Two Lineages with Different Characteristics

Revez, J., Rossi, M., Ellström, P., de Haan, C., Rautelin, H. & Hänninen, M-L., 2011, In : PLoS One. 6, 10, p. e26880 8 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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Genome sequence of Helicobacter bizzozeronii strain CIII-1, an isolate from human gastric mucosa

Schott, T., Rossi, M. & Hänninen, M-L., 2011, In : Journal of Bacteriology. 193, 17, p. 4565-4566 2 p.

Research output: Contribution to journalArticleScientificpeer-review