Research output per year
Research output per year
Personal profile
Curriculum vitae
Background and interests: Proteomics, Systems biology, Mass Spectrometry, Bioinformatics, Biological Data Mining
Education information
B.Sc. Cell and Molecular Biology, Tehran University, Iran, 2006
M.Sc. Cell and Molecular Biology, National Institute of Genetics and Biotechnology (NIGEB), Iran, 2008
Ph.D. Sabbatical Harvard Proteomics Resource, Harvard School of Public Health (HSPH), USA, 2011
Ph.D. Applied Proteomics, Beheshti University of Medical Sciences (SBMU), Iran, 2013
Specialization certificate Systems Biology, Systems Biology Center New York (SBCNY), USA, 2015
Docent of Bioinformatics, Faculty of Medicine, University of Helsinki, Finland, 2020
Fields of Science
- 3111 Biomedicine
- Bioinformaticas, Systems biology
- 318 Medical biotechnology
- Computational systems biomedicine
- 1182 Biochemistry, cell and molecular biology
- Proteomics
International and National Collaboration
Publications and projects within past five years.
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Re-evaluating experimental validation in the Big Data Era: a conceptual argument
Jafari, M., Guan, Y., Wedge, D. C. & Ansari-Pour, N., 24 Feb 2021, In: Genome Biology. 22, 1, 6 p., 71.Research output: Contribution to journal › Editorial › Scientific
Open AccessFile -
Identification of Celecoxib targeted proteins using label-free thermal proteome profiling on rat hippocampus
Gholizadeh, E., Karbalaei, R., Khaleghian, A., Salimi, M., Gilany, K., Soliymani, R., Tanoli, Z., Rezadoost, H., Baumann, M., Jafari, M. & Tang, J., 1 May 2021, In: Molecular pharmacology : an international journal. 99, 5, p. 308-318 11 p.Research output: Contribution to journal › Article › Scientific › peer-review
Open AccessFile -
Updates on drug-target network; facilitating polypharmacology and data integration by growth of DrugBank database
Barneh, F., Jafari, M. & Mirzaie, M., Nov 2016, In: Briefings in Bioinformatics. 17, 6, p. 1070-1080 11 p.Research output: Contribution to journal › Article › Scientific › peer-review
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Extraction and analysis of signatures from the Gene Expression Omnibus by the crowd
Wang, Z., Monteiro, C. D., Jagodnik, K. M., Fernandez, N. F., Gundersen, G. W., Rouillard, A. D., Jenkins, S. L., Feldmann, A. S., Hu, K. S., McDermott, M. G., Duan, Q., Clark, N. R., Jones, M. R., Kou, Y., Goff, T., Woodland, H., Amaral, F. M. R., Szeto, G. L., Fuchs, O., Rose, S. M. S-F., & 29 others, Sep 2016, In: Nature Communications. 7, 11 p., 12846.Research output: Contribution to journal › Article › Scientific › peer-review
Open AccessFile -
A community challenge for a pancancer drug mechanism of action inference from perturbational profile data
Douglass Jr., E. F., Allaway, R. J., Szalai, B., Wang, W., Tian, T., Fernández-Torras, A., Realubit, R., Karan, C., Zheng, S., Pessia, A., Tanoli, Z., Jafari, M., Wan, F., Li, S., Xiong, Y., Duran-Frigola, M., Bertoni, M., Badia-i-Mompel, P., Mateo, L., Guitart-Pla, O., & 8 others, 18 Jan 2022, In: Cell Reports Medicine. 3, 1, 20 p., 100492.Research output: Contribution to journal › Article › Scientific › peer-review
Open AccessFile
Projects
- 3 Active
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Functional Omics for Network-based drug
01/01/2023 → 31/12/2026
Project: Foundations (Private Foundations, Non-Profit Foundations, Charitable Trusts)
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BF R2B 3'Vector Andressoo J-O
Andressoo, J., Hietanen, S. J., Iivanainen, V. H., Ismayilzada, R., Jafari, M. & Mirzaie, M.
01/09/2022 → 30/08/2024
Project: Business Finland
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Multipartite network-based models for precision medicine
01/09/2020 → 31/08/2024
Project: Research project