Personal profile
Description of research and teaching
WARNING!
Please be aware that information in this database is only for my time as employee of the University of Helsinki. Also be aware that the network of collaborators includes only other researchers in this same database and so is missing all national and international collaborators outside the university. To see my full list of publications please use ORCID http://orcid.org/0000-0003-3385-972X.
Please see our lab's website at https://www.r4photobiology.info/senpep-posts.html for further information on our research. For details on software I have developed for data visualization and photobiological calculations, please, see http://www.r4photobiology.info/.
In addition be aware that I have held my position as University Lecturer/Senior University Lecturrer in Plant Physiological Ecology from 2006-03-01 until my retirement in 2024-08-31 without interruption. However, administrative reorganization changed the name of the unit.
Curriculum vitae
I studied agricultural engineering, with specialization in crop breeding, at the Faculty of Agronoy of the University of Buenos Aires. At this time I started doing research and never stopped. My M.Sc. in plant production was also from this faculty. In Buenos Aires I was at the IFEVA in Prof. Rodolfo A. Sánchez's group. I went to the University of Edinburgh for my PhD studies, in Prof. Paul Jarvis' group. Then I moved to Finland, initially to Suonenjoki, to METLA's research station headed by Dr. Heikki Smolander. Later I worked at the universities of Joensuu and Jyväskylä before moving to Helsinki. Early in my career I worked on whole-plant physiology with both ornamentals and wild native plants, later I shifted the focus to trees and to more ecologically and environmentally oriented questions. More recently we have started using molecular biology tools to study ecophysiological problems. In addition to the research described in these pages, I have taken part in research on other subjects: mineral nutrition (mainly the micronutrient boron and the role of mycorrhizas in its uptake); effects of low soil temperatures on tree growth and gas exchange; and physiology of stomata and the control of transpiration. We still have active research on this Iast subject and on the use by plants of visible and ultraviolet radiation environmental cues and signals as sources of information for anticipated acclimation. We have done both real world experiments and developed simulation models. Our recent work with highest impact has been related to the study of sunlight perception and signalling using state-of-the-art molecular methods such as RNAseq in plants grown or exposed outdoors. The research group I lead is called SenPEP. SenPEP stands for Sensory Photobiology and Ecophysiology of Plants. Please see our web site at http://blogs.helsinki.fi/senpep-blog/ for more information. I am also the communications officer of the UV4Plants scientific association (http://www.uv4plants.org/), and the editor-in-chief of the UV4Plants Bulletin.
I have held university lecturer positions both in Statistics and Environmental Metrics (University of Jyväskylä) and Plant Physiological Ecology (University of Helsinki). I also hold a docentship in Physiological Plant Ecology (University of Eastern Finland). I currently organize and teach four courses at MSc level: Sensory and physiological ecology of plants, Ecosystem ecology, Design and planning of biological experiments, and Using R for reproducible data analysis. I also regularly teach and contribute to the organization of PhD level courses in Plant Photobiology. I have organized and/or taught at European training schools on photobiology methods as well as similar events for research organizations. I have been the coordinator of the work group on UV-research methods and technology of the UV4Growth COST Action, which lead to the publication of a Handbook of Methods. I am currently the editor-in-chief of the UV4Plants Bulletin and the Communications officer for the U4Plants Association. I am the scientific coordinator of RCAFi the network of Argentinian researchers in Finland.
Education/Academic qualification
Physiological Plant Ecology, Dosentti, Joensuun yliopisto
Science, PhD, Interactions in Stomatal Function, University of Edinburgh
Fields of Science
- 1181 Ecology, evolutionary biology
- Photobiology
- Physiological ecology
- Sensory ecology
- Acclimation
- Transgenerational acclimation
- Ecotypes
- Plants
- Phenotypic plasticity
- 4111 Agronomy
- Agroecology
- Crop physiology
- Growth lights and LEDs
- Acclimation
- 4112 Forestry
- Forest ecology
- 11831 Plant biology
- Photobiology
- Photoreceptors
- Signalling
- Acclimation
- Transcriptomics
- Regulation
Collaborations and top research areas from the last five years
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Making the most of canopy light: shade avoidance under a fluctuating spectrum and irradiance
Sellaro, R., Durand, M., Aphalo, P. J. & Casal, J. J., 5 Aug 2024, In: Journal of Experimental Botany. 18 p.Research output: Contribution to journal › Review Article › peer-review
Open AccessFile -
Perception of solar UV radiation by plants: photoreceptors and mechanisms
Rai, N., Morales, L. O. & Aphalo, P. J., Jul 2021, In: Plant Physiology. 186, p. 1382-1396 15 p.Research output: Contribution to journal › Article › Scientific › peer-review
Open AccessFile -
Explaining pre-emptive acclimation by linking information to plant phenotype
Aphalo, P. J. & Sadras, V. O., 3 Sept 2022, In: Journal of Experimental Botany. 73, 15, p. 5213-5234 22 p., erab537.Research output: Contribution to journal › Review Article › peer-review
Open AccessFile -
Making science more effective for agriculture
Sadras, V., Alston, J., Aphalo, P. J., Connor, D., Denison, R. F., Fischer, T., Gray, R. S., Hayman, P. T., Kirkegaard, J. A., Kirchmann, H., Kropff, M. J., Lafitte, H. R., Langridge, P. D., Lenne, J. M., Minguez, M. I., Passioura, J., Porter, J. R., Reeves, T., Rodriguez, D. & Ryan, M. H. & 2 others, , 2020, In: Advances in Agronomy. 163, p. 153-177 25 p.Research output: Contribution to journal › Article › Scientific › peer-review
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Linking stomatal function with photosynthetic light reactions and stress response in faba bean
Shapiguzov, A., Punkkinen, M. E., Laine, T. K., Engström, S. B., Aphalo, P. J. & Khazaei, H., Jan 2026, In: Environmental and Experimental Botany. 241, 10 p., 106290.Research output: Contribution to journal › Article › Scientific › peer-review
Open AccessFile
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uv4pb: UV4Plants Bulletin
Aphalo, P. (Project manager), Robson, T. M. (Participant), Kotilainen, T. (Participant), Siipola, S. M. (Participant), Jansen, M. (Participant), Strid, Å. (Participant) & Barnes, P. (Participant)
01/01/2016 → …
Project: Other project
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ViPS: Viikki Plant Science Centre
Elomaa, P. (Project manager), Aphalo, P. (Principal Investigator), Asiegbu, F. (Principal Investigator), Bäck, J. (Principal Investigator), Berninger, F. (Principal Investigator), Brosche, M. (Principal Investigator), Fagerstedt, K. (Principal Investigator), Hänninen, H. (Principal Investigator), Heinonsalo, J. (Principal Investigator), Helariutta, Y. (Principal Investigator), Himanen, K. (Principal Investigator), Hölttä, T. (Principal Investigator), Hytönen, T. (Principal Investigator), Hyvönen, J. (Principal Investigator), Kangasjärvi, J. (Principal Investigator), Kärkönen, A. (Principal Investigator), Korpelainen, H. (Principal Investigator), Laine, A.-L. (Principal Investigator), Mähönen, A. P. (Principal Investigator), Mäkelä, A. (Principal Investigator), Mäkinen, K. (Principal Investigator), Ojala, A. (Principal Investigator), Overmyer, K. (Principal Investigator), Palonen, P. (Principal Investigator), Palva, E. T. (Principal Investigator), Pihlatie, M. (Principal Investigator), Pirhonen, M. (Principal Investigator), Porcar-Castell, A. (Principal Investigator), Pumpanen, J. (Principal Investigator), Rikkinen, J. (Principal Investigator), Robson, T. M. (Principal Investigator), Salojärvi, J. (Principal Investigator), Schulman, A. (Principal Investigator), Stoddard, F. (Principal Investigator), Teeri, T. (Principal Investigator), Valkonen, J. (Principal Investigator), Vesala, T. (Principal Investigator), Wrzaczek, M. (Principal Investigator) & Sims-Huopaniemi, K. (Other)
01/01/2015 → …
Project: Other project
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reproduce: Reproducible research: teaching materials
Aphalo, P. (Project manager)
01/01/2014 → …
Project: Other project
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r4photobiology: R 4 photobiology
Aphalo, P. (Principal Investigator), Kotilainen, T. (Participant), Robson, T. M. (Participant) & Albert, A. (Participant)
01/01/2013 → …
Project: Research project
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Sensory ecology of plants and pre-emptive acclimation
Aphalo, P. (Principal Investigator), Stoddard, F. (Participant), Yan, Y. (Participant), Rai, N. (Participant), Lindfors, A. (Participant), Novoplansky, A. (Participant), Sadras, V. O. (Participant), Morales Suarez, L. O. (Participant), Lehto, T. (Participant), Neugart, S. (Participant), Wang, F. (Participant), Siipola, S. M. (Participant), Calderini, D. (Participant), Casal, J. J. (Participant), Lehto, T. (Participant), Kotilainen, T. (Participant) & Sipari, N. (Project manager)
01/01/2012 → …
Project: Research project
Activities
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Physiology and control of Heracleum spp.
Aphalo, P. (Co-supervisor)
1 Jan 2020 → …Activity: Examination types › Supervisor or co-supervisor of doctoral thesis
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Botany Letters (Journal)
Aphalo, P. (Reviewer)
Aug 2020Activity: Publication peer-review and editorial work types › Peer review of manuscripts
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UV-radiation sources: Their use in plant research
Aphalo, P. (Speaker)
6 Oct 2020Activity: Talk or presentation types › Oral presentation
File -
Nature (Journal)
Aphalo, P. (Reviewer)
2020Activity: Publication peer-review and editorial work types › Peer review of manuscripts
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UV and VIS radiation calculations: Theory and calculations (Using R)
Aphalo, P. (Speaker)
6 Oct 2020Activity: Talk or presentation types › Oral presentation
File
Equipment
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FBES/OEB/SenPEP meteorological station
Aphalo, P. (Manager)
Department of Organismal and Evolutionary BiologyFacility/equipment: Equipment
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Photobiology Plant Growth Facilities
Aphalo, P. (Manager)
Department of Organismal and Evolutionary BiologyFacility/equipment: Research Laboratory