Photo of Perttu Permi
  • Viikinkaari 5, Biocenter 2

    00790 Helsinki

    Finland

19992019
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Publications 1999 2019

2019

Arabidopsis RCD1 coordinates chloroplast and mitochondrial functions through interaction with ANAC transcription factors

Shapiguzov, A., Vainonen, J., Hunter, K. A., Tossavainen, H. P. M., Tiwari, A., Järvi, S., Hellman, M. H., Aarabi, F., Alseekh, S., Wybouw, B., Van Der Kelen, K., Nikkanen, L., Krasensky-Wrzaczek, J., Sipari, N. H., Keinänen, M., Tyystjaervi, E., Rintamäki, E., De Rybel, B., Salojärvi, J. T., Van Breusegem, F. & 6 othersFernie, A. R., Brosche, M. J., Permi, P. E. I., Aro, E-M., Wrzaczek, M. A. & Kangasjärvi, J. S., 15 Feb 2019, In : eLife. 8, 35 p., e43284.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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2018

Discovery of a Pederin Family Compound in a Nonsymbiotic Bloom-Forming Cyanobacterium

Kust, A., Mares, J., Jokela, J., Urajova, P., Hajek, J., Saurav, K., Voracova, K., Fewer, D. P., Haapaniemi, E., Permi, P., Rehakova, K., Sivonen, K. & Hrouzek, P., May 2018, In : ACS Chemical Biology. 13, 5, p. 1123-1129 7 p.

Research output: Contribution to journalArticleScientificpeer-review

Maternal Inheritance of a Recessive RBP4 Defect in Canine Congenital Eye Disease

Kaukonen, M., Woods, S., Ahonen, S., Lemberg, S., Hellman, M., Hytönen, M. K., Permi, P., Glaser, T. & Lohi, H., 29 May 2018, In : Cell Reports. 23, 9, p. 2643-2652 10 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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Structural and Functional Insights Into Lysostaphin–Substrate Interaction

Tossavainen, H., Raulinaitis, V., Kauppinen, L., Pentikäinen, U., Maaheimo, H. & Permi, P., 3 Jul 2018, In : Frontiers in Molecular Biosciences. 5, 14 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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The Swinholide Biosynthesis Gene Cluster from a Terrestrial Cyanobacterium, Nostoc sp. Strain UHCC 0450

Humisto, A. K., Jokela, J. K., Liu, L., Wahlsten, M. P-V., Wang, H., Permi, P. E. I., Machado, J. P., Antunes, A., Fewer, D. P. & Sivonen, A. K., Jan 2018, In : Applied and Environmental Microbiology. 84, 3, 14 p., e02321-17.

Research output: Contribution to journalArticleScientificpeer-review

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2017

A novel intrinsically disordered outer membrane lipoprotein of Aggregatibacter actinomycetemcomitans binds various cytokines and plays a role in biofilm response to interleukin-1 beta and interleukin-8

Ahlstrand, T., Tuominen, H., Beklen, A., Torittu, A., Oscarsson, J., Sormunen, R., Pöllänen, M. T., Permi, P. & Ihalin, R., 2017, In : Virulence. 8, 2, p. 115-134 20 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access

Characterization of sulfhydryl oxidase from Aspergillus tubingensis

Nivala, O., Faccio, G., Arvas, M., Permi, P., Buchert, J., Kruus, K. & Mattinen, M-L., 8 Dec 2017, In : BMC Biochemistry. 18, 14 p., 15.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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Cyanobacterial bioactive compounds from Brazilian under-explored environments

Shishido, T. K., Jokela, J., Wahlsten, M., Fewer, D., Fiore, M. F., Herfindal, L., Permi, P. & Sivonen, K., 2017.

Research output: Conference materialsPosterResearch

H-1, C-13 and N-15 NMR chemical shift assignments of A-thaliana RCD1 RST

Tossavainen, H., Hellman, M., Vainonen, J. P., Kangasjarvi, J. & Permi, P., Oct 2017, In : Biomolecular NMR assignments. 11, 2, p. 207-210 4 p.

Research output: Contribution to journalArticleScientificpeer-review

H-1, C-13 and N-15 resonance assignments of the new lysostaphin family endopeptidase catalytic domain from Staphylococcus aureus

Raulinaitis, V., Tossavainen, H., Aitio, O., Seppala, R. & Permi, P., Apr 2017, In : Biomolecular NMR assignments. 11, 1, p. 69-73 5 p.

Research output: Contribution to journalArticleScientificpeer-review

Identification and structural characterization of LytU, a unique peptidoglycan endopeptidase from the lysostaphin family

Raulinaitis, V., Tossavainen, H., Aitio, O., Juuti, J. T., Hiramatsu, K., Kontinen, V. & Permi, P., 20 Jul 2017, In : Scientific Reports. 7, 14 p., 6020.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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2016

Redox-dependent disulfide bond formation in SAP30L corepressor protein: Implications for structure and function

Laitaoja, M., Tossavainen, H., Pihlajamaa, T., Valjakka, J., Viiri, K., Lohi, O., Permi, P. & Jänis, J., Mar 2016, In : Protein Science. 25, 3, p. 572-586 15 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access

Structural Basis of the High Affinity Interaction between the Alphavirus Nonstructural Protein-3 (nsP3) and the SH3 Domain of Amphiphysin-2

Tossavainen, H., Aitio, O., Hellman, M., Saksela, K. & Permi, P., 29 Jul 2016, In : Journal of Biological Chemistry. 291, 31, p. 16307-16317 13 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
2015

Antifungal activity improved by coproduction of cyclodextrins and anabaenolysins in Cyanobacteria

Shishido, T. K., Jokela, J., Kolehmainen, C-T., Fewer, D. P., Wahlsten, M., Wang, H., Rouhiainen, L., Rizzi, E., De Bellis, G., Permi, P. & Sivonen, K., 2015, In : Proceedings of the National Academy of Sciences of the United States of America. 112, 44, p. 13669-13674 6 p.

Research output: Contribution to journalArticleScientificpeer-review

Antifungal Compounds from Cyanobacteria

Shishido, T. K., Humisto, A., Jokela, J., Liu, L., Wahlsten, M., Tamrakar, A., Fewer, D. P., Permi, P., Andreote, A. P. D., Fiore, M. F. & Sivonen, K., 2015, In : Marine Drugs. 13, 4, p. 2124-2140 17 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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Flexible Structure of Peptide-Bound Filamin A Mechanosensor Domain Pair 20-21

Seppälä, J., Tossavainen, H., Rodic, N., Permi, P., Pentikäinen, U. & Ylänne, J., 31 Aug 2015, In : PLoS One. 10, 8, 19 p., 0136969.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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H-N, N, C-alpha, C-beta and C' assignments of the intrinsically disordered C-terminus of human adenosine A(2A) receptor

Tossavainen, H., Hellman, M., Piirainen, H., Jaakola, V-P. & Permi, P., Oct 2015, In : Biomolecular NMR assignments. 9, 2, p. 403-406 4 p.

Research output: Contribution to journalArticleScientificpeer-review

H-N, N-H, C-alpha, C-beta, and methyl group assignments of filamin multidomain fragments IgFLNc4-5 and IgFLNa3-5

Tossavainen, H., Seppälä, J., Sethi, R., Pihlajamaa, T. & Permi, P., Apr 2015, In : Biomolecular NMR assignments. 9, 1, p. 47-50 4 p.

Research output: Contribution to journalArticleScientificpeer-review

Human Adenosine A2A Receptor Binds Calmodulin with High Affinity in a Calcium-Dependent Manner

Piirainen, H., Hellman, M., Tossavainen, H., Permi, P., Kursula, P. & Jaakola, V-P., 17 Feb 2015, In : Biophysical Journal. 108, 4, p. 903-917 15 p.

Research output: Contribution to journalArticleScientificpeer-review

Hydrophobic pocket targeting probes for enteroviruses

Martikainen, M., Salorinne, K., Lahtinen, T., Malola, S., Permi, P., Hakkinen, H. & Marjomaki, V., 2015, In : Nanoscale. 7, 41, p. 17457-17467 11 p.

Research output: Contribution to journalArticleScientificpeer-review

Pseudoaeruginosins, Nonribosomal Peptides in Nodularia spumigena

Liu, L., Budnjo, A., Jokela, J., Haug, B. E., Fewer, D. P., Wahlsten, M., Rouhiainen, L., Permi, P., Fossen, T. & Sivonen, K., Mar 2015, In : ACS Chemical Biology. 10, 3, p. 725-733 9 p.

Research output: Contribution to journalArticleScientificpeer-review

Role of two sequence motifs of mesencephalic astrocyte-derived neurotrophic factor in its survival-promoting activity

Mätlik, K., Yu, L., Eesmaa, A., Hellman, M., Lindholm, P., Peränen, J., Galli, E., Anttila, J., Saarma, M., Permi, P., Airavaara, M. & Arumäe, U., Dec 2015, In : Cell Death and Disease. 6, 8 p., 2032.

Research output: Contribution to journalArticleScientificpeer-review

2014

4-Methylproline Guided Natural Product Discovery: Co-Occurrence of 4-Hydroxy- and 4-Methylprolines in Nostoweipeptins and Nostopeptolides

Liu, L., Jokela, J., Herfindal, L., Wahlsten, M., Sinkkonen, J., Permi, P., Fewer, D. P., Doskeland, S. O. & Sivonen, K., Nov 2014, In : ACS Chemical Biology. 9, 11, p. 2646-2655 10 p.

Research output: Contribution to journalArticleScientificpeer-review

A Novel Structural Unit in the N-terminal Region of Filamins

Sethi, R., Seppala, J., Tossavainen, H., Ylilauri, M., Ruskamo, S., Pentikainen, O. T., Pentikainen, U., Permi, P. & Ylanne, J., 21 Mar 2014, In : Journal of Biological Chemistry. 289, 12, p. 8588-8598 11 p.

Research output: Contribution to journalArticleScientificpeer-review

Bridge over troubled proline: assignment of intrinsically disordered proteins using (HCA)CON(CAN)H and (HCA)N(CA)CO(N)H experiments concomitantly with HNCO and i(HCA)CO(CA)NH

Hellman, M., Piirainen, H., Jaakola, V-P. & Permi, P., Jan 2014, In : Journal of Biomolecular NMR. 58, 1, p. 49-60 12 p.

Research output: Contribution to journalArticleScientificpeer-review

Chimeric Avidin - NMR Structure and Dynamics of a 56 kDa Homotetrameric Thermostable Protein

Tossavainen, H., Kukkurainen, S., Määttä, J. A. E., Kähkönen, N., Pihlajamaa, T., Hytönen, V. P., Kulomaa, M. S. & Permi, P., 24 Jun 2014, In : PLoS One. 9, 6, 12 p., 100564.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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Hassallidins, antifungal glycolipopeptides, are widespread among cyanobacteria and are the end-product of a nonribosomal pathway

Vestola, J., Shishido, T. K., Jokela, J., Fewer, D. P., Aitio, O., Permi, P., Wahlsten, M., Wang, H., Rouhiainen, L. & Sivonen, K., 2014, In : Proceedings of the National Academy of Sciences of the United States of America. 111, 18, p. E1909-E1917 9 p.

Research output: Contribution to journalArticleScientificpeer-review

Nostosins, Trypsin Inhibitors Isolated from the Terrestrial Cyanobacterium Nostoc sp Strain FSN

Liu, L., Jokela, J., Wahlsten, M., Nowruzi, B., Permi, P., Zhang, Y. Z., Xhaard, H., Fewer, D. P. & Sivonen, K., Aug 2014, In : Journal of Natural Products. 77, 8, p. 1784-1790 7 p.

Research output: Contribution to journalArticleScientificpeer-review

Secondary metabolite from Nostoc XPORK14A inhibits photosynthesis and growth of Synechocystis PCC 6803

Shunmugam, S., Jokela, J., Wahlsten, M., Battchikova, N., Rehman, A. U., Vass, I., Karonen, M., Sinkkonen, J., Permi, P., Sivonen, K., Aro, E-M. & Allahverdiyeva, Y., Jun 2014, In : Plant, Cell and Environment. 37, 6, p. 1371-1381 11 p.

Research output: Contribution to journalArticleScientificpeer-review

2013

Genome mining expands the chemical diversity of the cyanobactin family to include highly modified linear peptides

Leikoski, N., Liu, L., Jokela, J., Wahlsten, M., Gugger, M., Calteau, A., Permi, P., Kerfeld, C., Sivonen, K. & Fewer, D. P., 2013, In : Chemistry & Biology. 20, 8, p. 1033-1043 11 p.

Research output: Contribution to journalArticleScientificpeer-review

New Structural Variants of Aeruginosin Produced by the Toxic Bloom Forming Cyanobacterium Nodularia spumigena

Fewer, D. P., Jokela, J., Paukku, E., Osterholm, J., Wahlsten, M., Permi, P., Aitio, O., Rouhiainen, L., Gomez-Saez, G. V. & Sivonen, K., 2013, In : PLoS One. 8, 9, 10 p., e73618.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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Resonance assignments of the 56 kDa chimeric avidin in the biotin-bound and free forms

Tossavainen, H., Helppolainen, S. H., Määttä, J. A. E., Pihlajamaa, T., Hytönen, V. P., Kulomaa, M. S. & Permi, P., 2013, In : Biomolecular NMR assignments. 7, 1, p. 35-38 4 p.

Research output: Contribution to journalArticleScientificpeer-review

Structure of Plasmodium falciparum TRAP (thrombospondin-related anonymous protein) A domain highlights distinct features in apicomplexan von Willebrand factor A homologues.

Pihlajamaa, T., Kajander, T., Knuuti, J., Horkka, K., Sharma, A. & Permi, P., 15 Mar 2013, In : Biochemical Journal. 450, 3, p. 469-473 5 p.

Research output: Contribution to journalArticleScientificpeer-review

Structure of Plasmodium talciparum TRAP (thrombospondin-related anonymous protein) A domain highlights distinct features in apicomplexan von Willebrand factor A homologues

Pihlajamaa, T., Kajander, T., Knuuti, J., Horkka, K., Sharma, A. & Permi, P., 15 Mar 2013, In : Biochemical Journal. 450, p. 469-476 8 p.

Research output: Contribution to journalArticleScientificpeer-review

2012

Alpha proton detection based backbone assignment of intrinsically disordered proteins

Permi, P. & Hellman, M., 2012, In : Methods in molecular biology. 895, p. 211-226 16 p.

Research output: Contribution to journalArticleScientificpeer-review

Anabaenolysins, Novel Cytolytic Lipopeptides from Benthic Anabaena Cyanobacteria

Jokela, J., Oftedal, L., Herfindal, L., Permi, P., Wahlsten, M., Doskeland, S. O. & Sivonen, K., 2012, In : PLoS One. 7, 7, p. - 9 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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Diversity in prokaryotic glycosylation: an archaeal-derived N-linked glycan contains legionaminic acid.

Kandiba, L., Aitio, O. M. A., Helin, J., Guan, Z., Permi, P., Bamford, D., Eichler, J. & Roine, E., 2012, In : Molecular Microbiology. 84, 3, p. 578-593 16 p.

Research output: Contribution to journalArticleScientificpeer-review

Enterohaemorrhagic Escherichia Coil Exploits a Tryptophan Switch to Hijack Host F-Actin Assembly

Aitio, O., Hellman, M., Skehan, B., Kesti, T., Leong, J. M., Saksela, K. & Permi, P., 10 Oct 2012, In : Structure. 20, 10, p. 1692-1703 12 p.

Research output: Contribution to journalArticleScientificpeer-review

Model of a Six Immunoglobulin-Like Domain Fragment of Filamin A (16-21) Built Using Residual Dipolar Couplings

Tossavainen, H., Koskela, O., Jiang, P., Ylänne, J., Campbell, I. D., Kilpeläinen, I. & Permi, P., 2012, In : Journal of the American Chemical Society. 134, 15, p. 6660-6672 13 p.

Research output: Contribution to journalArticleScientificpeer-review

SH3 domain ligand binding: What's the consensus and where's the specificity?

Saksela, K. & Permi, P., 14 Aug 2012, In : FEBS Letters. 586, 17, p. 2609-2614 6 p.

Research output: Contribution to journalReview ArticleScientificpeer-review

Open Access
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2011

Characterization of Intrinsically Disordered Prostate Associated Gene (PAGE5) at Single Residue Resolution by NMR Spectroscopy

Hellman, M., Tossavainen, H., Rappu, P., Heino, J. & Permi, P., 2011, In : PLoS One. 6, 11, p. e26633 11 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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Effect of protein structural integrity on cross-linking by tyrosinase evidenced by multidimensional heteronuclear magnetic resonance spectroscopy.

Hellman, M., Mattinen, M-L., Fu, B., Buchert, J. & Permi, P., 2011, In : Journal of Biotechnology. 151, 1, p. 143-150 18 p.

Research output: Contribution to journalArticleScientificpeer-review

Extension of the HA-detection based approach: (HCA)CON(CA)H and (HCA)NCO(CA)H experiments for the main-chain assignment of intrinsically disordered proteins

Mäntylahti, S. J., Hellman, M. & Permi, P., 25 Jan 2011, In : Journal of Biomolecular NMR. 49, p. 99-109 11 p.

Research output: Contribution to journalArticleScientificpeer-review

Loosening of globular structure under alkaline pH affects accessibility of beta-lactoglobulin to tyrosinase-induced oxidation and subsequent cross-linking

Partanen, R., Torkkeli, M., Hellman, M., Permi, P., Serimaa, R., Buchert, J. & Mattinen, M-L., 2011, In : Enzyme and microbial technology. 49, p. 131-138 8 p.

Research output: Contribution to journalArticleScientificpeer-review

Mesencephalic Astrocyte-derived Neurotrophic Factor (MANF) Has a Unique Mechanism to Rescue Apoptotic Neurons

Hellman, M., Arumäe, U., Yu, L., Lindholm, P. K., Peränen, J., Saarma, M. & Permi, P., 2011, In : Journal of Biological Chemistry. 286, 4, p. 2675-2680 6 p.

Research output: Contribution to journalArticleScientificpeer-review

Protein Analysis by (31)P NMR Spectroscopy in Ionic Liquid: Quantitative Determination of Enzymatically Created Cross-Links

Monogioudi, E., Permi, P., Filpponen, I., Lienemann, M., Li, B., Argyropoulos, D., Buchert, J. & Mattinen, M-L., 10 Jan 2011, In : Journal of Agricultural and Food Chemistry. 59, 4, p. 1352-1362 11 p.

Research output: Contribution to journalArticleScientificpeer-review

2010

1H, 13C and 15N resonance assignments of the human mesencephalic astrocyte-derived neurotrophic factor.

Hellman, M., Peränen, J., Saarma, M. & Permi, P., 2010, In : Biomolecular NMR assignments. 4, 2, p. 215-217 3 p.

Research output: Contribution to journalArticleScientificpeer-review

A novel cyanobacterial nostocyclopeptide is a potent antitoxin against microcystins.

Jokela, J., Herfindal, L., Wahlsten, M., Permi, P., Selheim, F., Vasconcelos, V., Døskeland, S. O. & Sivonen, K., 23 Jun 2010, In : ChemBioChem : a European journal of chemical biology. 11, 11, p. 1594-1599 6 p.

Research output: Contribution to journalArticleScientificpeer-review

H-1, C-13 and N-15 resonance assignments of the major extracytoplasmic domain of the cell shape-determining protein MreC from Bacillus subtilis

Kyburz, A., Raulinaitis, V., Koskela, O. K., Kontinen, V. P., Permi, P., Kilpeläinen, I. & Seppälä, R., Oct 2010, In : Biomolecular NMR assignments. 2010, 2, p. 235-238 3 p.

Research output: Contribution to journalArticleScientificpeer-review

HA-detected experiments for the backbone assignment of intrinsically disordered proteins

Mäntylahti, S. J., Aitio, O., Hellman, M. & Permi, P., 2010, In : Journal of Biomolecular NMR. 47, 3, p. 171-181 11 p.

Research output: Contribution to journalArticleScientificpeer-review