Research output per year
Research output per year
Personal profile
Fields of Science
- 1184 Genetics, developmental biology, physiology
- 1183 Plant biology, microbiology, virology
- 1181 Ecology, evolutionary biology
- 1182 Biochemistry, cell and molecular biology
International and National Collaboration
Publications and projects within past five years.
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Aerobic Adaptation and Metabolic Dynamics of Propionibacterium freudenreichii DSM 20271: Insights from Comparative Transcriptomics and Surfaceome Analysis
Loivamaa, I., Sillanpää, L. A., Deptula, P., Chamlagain, B., Edelmann, M., Auvinen, P., Nyman, T. A., Savijoki, K., Piironen, V. & Varmanen, P., 30 Sept 2024, In: mSystems.Research output: Contribution to journal › Article › Scientific › peer-review
Open AccessFile -
Differentiation of highly pathogenic strains of human JC polyomavirus in neurological patients by next generation sequencing
Auvinen, E., Honkimaa, A., Laine, P., Passerini, S., Moens, U., Pietropaolo, V., Saarela, M., Maunula, L., Mannonen, L., Tynninen, O., Haapasalo, H., Rauramaa, T., Auvinen, P. & Liimatainen, H., Apr 2024, In: Journal of Clinical Virology. 171, 8 p., 105652.Research output: Contribution to journal › Article › Scientific › peer-review
Open AccessFile -
Elevated fecal calprotectin is associated with gut microbial dysbiosis, altered serum markers and clinical outcomes in older individuals
Heinzel, S., Jureczek, J., Kainulainen, V., Nieminen, A. I., Suenkel, U., von Thaler, A.-K., Kaleta, C., Eschweiler, G. W., Brockmann, K., Aho, V. T. E., Auvinen, P., Maetzler, W., Berg, D. & Scheperjans, F., 2024, In: Scientific Reports. 14, 1, 13 p., 13513.Research output: Contribution to journal › Article › Scientific › peer-review
Open AccessFile -
Exploring JC Polyomavirus Sequences and Human Gene Expression in Brain Tissue of Patients With Progressive Multifocal Leukoencephalopathy
Honkimaa, A., Laine, P., Suppula, J., Tynninen, O., Saarela, M., Laakso, S. M., Hetemäki, I., Liimatainen, H., Auvinen, P. & Auvinen, E., Feb 2024, In: Journal of Infectious Diseases. 230, 3, p. e732-e736 5 p.Research output: Contribution to journal › Article › Scientific › peer-review
Open AccessFile -
Gut Microbiome Changes in Patients With Idiopathic Normal Pressure Hydrocephalus
Brandt, E., Koivisto, A., Pereira, P., Mustanoja, E., Auvinen, P., Saari, T., Lehtola, J.-M., Hannonen, S., Rusanen, M., Leinonen, V., Scheperjans, F. & Kärkkäinen, V., 1 Apr 2024, In: Alzheimer Disease and Associated Disorders. 38, 2, p. 133-139 7 p.Research output: Contribution to journal › Article › Scientific › peer-review
Open AccessFile
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Jääkauden jälkeisten ekosysteemimuutoste
Auvinen, P. (Project manager), Feng, X. (Participant), Piilo, S. R. (Participant) & Pilkama, H. E. (Participant)
01/02/2023 → 31/12/2025
Project: Foundations (Private Foundations, Non-Profit Foundations, Charitable Trusts)
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University profiling funding 7 InterEarth RESET
Airavaara, M. (Project manager), Heiskanen, J. (Project manager), Huiskonen, J. (Project manager), Hyvärinen, M. (Project manager), Kulmala, M. (Project manager), Kulmala, M. (Project manager), Mervaala, E. (Project manager), Mäkelä, J. (Project manager), Primmer, C. (Project manager), Räsänen, A. (Project manager), Sironen, T. (Project manager), Toivonen, R. (Project manager), Aalto, P. (Participant), Ahonen, L. (Participant), Alakukku, L. (Participant), Auvinen, P. (Participant), Betz-Heinemann, A. (Participant), Citterico, M. (Participant), Ecke, F. (Participant), El Wali, M. (Participant), Eronen, J. T. (Participant), Fuentenebro Alonso, P. (Participant), Gammal, J. (Participant), Green, S. (Participant), Haaranen, D. A. P. (Participant), Heikinheimo, A. (Participant), Heinonen, M. (Participant), Heinonen, S. (Participant), Hohti, R. (Participant), Holopainen, M. (Participant), Hyytiäinen, K. (Participant), Jokiranta, J. (Participant), Kaartinen, T. (Participant), Karhu, K. (Participant), Kaukonen, M. (Participant), Kemppinen, J. (Participant), Kerminen, V.-M. (Participant), Kiljunen, S. (Participant), Kolari, P. (Participant), Korpela, K. (Participant), Koskinen, M. (Participant), Lajunen, A. (Participant), Lampilahti, J. (Participant), Lehto, K.-M. (Participant), Lewandowska, A. (Participant), Lindholm, T. M. (Participant), Lindroos, M. (Participant), Lintunen, A. (Participant), Luomanen, P. (Participant), Mappes, J. (Participant), Mietola, R. (Participant), Mühleip, A. W. (Participant), Nordström, M. C. (Participant), Norkko, J. (Participant), Omija Korpela, J. A. (Participant), Paasonen, P. (Participant), Pietikäinen, J. (Participant), Pihlatie, M. (Participant), Poupart, T. A. (Participant), Pylkkö, T. (Participant), Raivonen, M. (Participant), Rasmus, L. S. (Participant), Ruohomäki, A. I. (Participant), Ryhti-Laine, K. (Participant), Saari, T. (Participant), Sadeghibagherabadi, A. (Participant), Sandström, V. (Participant), Sikanen, T. (Participant), Siven, M. (Participant), Spisak, S. M. (Participant), Su, X. (Participant), Syrjä, P. (Participant), Taira, T. (Participant), Tani, S. (Participant), Tanskanen, T. T. (Participant), Tatti, N. (Participant), Thomas, D. N. (Participant), Tiira, T. (Participant), Toppinen, A. (Participant), Uimari, P. (Participant), Uusitalo, J. A. (Participant), Vainio, A. (Participant), Varjosalo, M. (Participant), Vartiainen, M. (Participant), Veikkolainen, T. (Participant) & Zaidan, M. A. (Participant)
Academy of Finland, Suomen Akatemia Projektilaskutus
01/01/2023 → 31/12/2028
Project: Research Council of Finland: Strengthening university research profiles (PROFI)
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The cross-talk between epithelium, genome and microbiome in the pathogenesis of airway allergy, asthma and chronic rhinosinusitis
Toppila Salmi, S. (Project manager), Mattila, P. (Participant), Kankainen, M. (Participant), Terna, E. (Participant), Renkonen, J. (Participant), Joenväärä, S. (Participant), Kauppi, P. (Participant), Mäkelä, M. (Participant), Haahtela, T. M. K. (Participant), Pelkonen, A. S. (Participant), Auvinen, P. (Participant), Alenius, H. (Participant), Hanif, T. (Participant), Dhaygude, K. (Participant) & Renkonen, R. (Project manager)
01/03/2011 → …
Project: Research project
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Genome, transcriptome and proteome of the wood-decay fungus Phlebia radiata
Lundell, T. (Project manager), Kuuskeri, J. (Participant), Mäkinen, M. (Participant), Paulin, L. (Participant), Laine, P. (Participant), Smolander, O.-P. (Participant), Varjosalo, M. (Participant) & Auvinen, P. (Participant)
03/01/2011 → 31/12/2017
Project: Research project
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Glanville fritillary butterfly genomics and genetics
Lehtonen, R. (Participant), Ahola, V. (Participant), Somervuo, P. J. (Participant), Frilander, M. (Participant), Auvinen, P. (Participant), Paulin, L. (Participant) & Holm, L. (Participant)
02/02/2009 → 30/03/2013
Project: Research project
Activities
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12th International Mycological Congress
van Geerenstein, R. (Attendee), Kim, W. (Attendee), Wahlsten, M. (Attendee), Laine, P. (Attendee), Rikkinen, J. (Attendee), Fewer, D. (Attendee), Lundell, T. (Attendee), Hur, J.-S. (Attendee), Collemare, J. (Attendee), Auvinen, P. (Attendee) & Shishido, T. K. (Attendee)
11 Aug 2024 → 15 Aug 2024Activity: Participating in or organising an event types › Organisation and participation in conferences, workshops, courses, seminars
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XIII European Conference on Marine Natural Products and XVII International Symposium on Marine Natural Products
Shishido, T. K. (Attendee), Laine, P. (Attendee), Delbaje, E. (Attendee), Wahlsten, M. (Attendee), Rikkinen, J. (Attendee), Fewer, D. (Attendee), Lundell, T. (Attendee) & Auvinen, P. (Attendee)
7 Sept 2023Activity: Participating in or organising an event types › Organisation and participation in conferences, workshops, courses, seminars
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9th Symposium of the International Association for Lichenology, IAL9
Shishido, T. K. (Speaker: Presenter), Wahlsten, M. (Attendee), Laine, P. (Attendee), Rikkinen, J. K. (Attendee), Lundell, T. (Attendee) & Auvinen, P. (Attendee)
6 Aug 2021Activity: Participating in or organising an event types › Organisation and participation in conferences, workshops, courses, seminars
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Reviewer of doctoral thesis
Auvinen, P. (Pre-examiner)
2015Activity: Examination types › Pre-examiner of doctoral thesis
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Opponent of doctoral thesis
Auvinen, P. (Opponent)
2015Activity: Examination types › Opponent of doctoral dissertation
Press/Media
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Tammenlastuja: Menneisyys opettaa
Heikkilä, M., Manninen, M. A., Valtonen, T. A. I., Weckström, J., Oinonen, M., Tallavaara, M., Eronen, J. T., Kahilainen, K., Piro, A., Malinen, T., Hellsten, S., Mykrä, H., Tolonen, K., Harkonen, L. S., Pokka, P. H., Auvinen, P., Väliranta, M., Arppe, L., Ekholm, P., Salonen, J. S., Zimmermann, H., Ribeiro, S., Saarni, S., Vinni, M. & Atti, S. M.
10/10/2023
1 item of Media coverage
Press/Media: Press / Media
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Another covid-19 infection confirmed from a Finnish virus variant
24/02/2021
1 item of Media coverage
Press/Media: Press / Media
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New Mutant COVID Strain Discovered In Finland Which May Evade Tests
24/02/2021
2 items of Media coverage
Press/Media: Press / Media
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Covid-19: Scientists find new ‘super variant’ in Finland
18/02/2021 → 20/02/2021
2 items of Media coverage
Press/Media: Press / Media
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New COVID-19 strain discovered in Finland, researchers claim
19/02/2021 → 20/02/2021
39 items of Media coverage
Press/Media: Press / Media