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  • PL 56 (Viikinkaari 5)

    00014

    Finland

  • Viikinkaari 5, Biocenter 2

    00790 Helsinki

    Finland

19982019
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Publications 1998 2019

2019

Alternative oxidase-mediated respiration prevents lethal mitochondrial cardiomyopathy

Rajendran, J., Purhonen, J., Tegelberg, S., Smolander, O-P., Mörgelin, M., Rozman, J., Gailus-Durner, V., Fuchs, H., de Angelis, M. H., Auvinen, P., Mervaala, E., Jacobs, H. T., Szibor, M., Fellman, V. & Kallijärvi, J., Jan 2019, In : EMBO molecular medicine. 11, 1, 19 p., 9456.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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Differential abundance analyses of human microbiota in Parkinson’s disease

Aho, V. T. E., 29 Mar 2019, Helsinki: University of Helsinki. 72 p.

Research output: ThesisDoctoral ThesisCollection of Articles

Genome description of Phlebia radiata 79 with comparative genomics analysis on lignocellulose decomposition machinery of phlebioid fungi

Mäkinen, M., Kuuskeri, J., Laine, P., Smolander, O-P., Kovalchuk, A., Zeng, Z., Asiegbu, F., Paulin, L., Auvinen, P. & Lundell, T., 28 May 2019, In : BMC Genomics. 20, 22 p., 430.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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Serotonin and tryptophan metabolites, autoantibodies and gut microbiome in APECED

Naskali, E., Dettmer, K., Oefner, P., Pereira, P. A. B., Krohn, K., Auvinen, P., Ranki, A. & Kluger, N., Jan 2019, In : Endocrine Connections. 8, 1, p. 69-77 9 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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2018

Acidipropionibacterium virtanenii sp. nov., isolated from malted barley

Deptula, P., Smolander, O-P. A., Laine, P. K. S., Roberts, R. J., Edelmann, J. M., Peltola, P., Piironen, V. I., Paulin, L. G., Storgårds, E., Savijoki, K., Laitila, A., Auvinen, P. O. V. & Varmanen, P. K., Oct 2018, In : International Journal of Systematic and Evolutionary Microbiology. 68, 10, p. 3175-3183 9 p.

Research output: Contribution to journalArticleScientificpeer-review

BARCOSEL: a tool for selecting an optimal barcode set for high-throughput sequencing

Somervuo, P., Koskinen, P., Mei, P., Holm, L., Auvinen, P. & Paulin, L., 5 Jul 2018, In : BMC Bioinformatics. 19, 257, 6 p., 257.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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BK polyomavirus microRNA expression and sequence variation in polyomavirus-associated nephropathy

Virtanen, E., Seppälä, H., Helanterä, I., Laine, P., Lautenschlager, I., Paulin, L., Mannonen, L., Auvinen, P. & Auvinen, E., May 2018, In : Journal of Clinical Virology. 102, p. 70-76 7 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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Bracketing phenogenotypic limits of mammalian hybridization

Savriama, Y., Valtonen, M., Kammonen, J. I., Rastas, P., Smolander, O-P., Lyyski, A., Häkkinen, T. J., Corfe, I. J., Gerber, S., Salazar-Ciudad, I., Paulin, L., Holm, L., Löytynoja, A., Auvinen, P. & Jernvall, J., 28 Nov 2018, In : Royal Society Open Science. 5, 11, 12 p., 180903.

Research output: Contribution to journalArticleScientificpeer-review

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Genetic Control of Myelin Plasticity after Chronic Psychosocial Stress

Laine, M. A., Trontti, K., Misiewicz, Z., Sokolowska, E., Kulesskaya, N., Heikkinen, A., Saarnio, S., Balcells, I., Ameslon, P., Greco, D., Mattila, P., Ellonen, P., Paulin, L., Auvinen, P., Jokitalo, E. & Hovatta, I., Jul 2018, In : eNeuro. 5, 4, 16 p., UNSP e0166-18.2018.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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Gut microbiome in gestational diabetes: a cross-sectional study of mothers and offspring 5 years postpartum

Hasan, S., Aho, V., Pereira, P., Paulin, L., Koivusalo, S. B., Auvinen, P. & Eriksson, J. G., Jan 2018, In : Acta Obstetricia et Gynecologica Scandinavica. 97, 1, p. 38-46 9 p.

Research output: Contribution to journalArticleScientificpeer-review

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Isotretinoin and lymecycline treatments modify the skin microbiota in acne

Kelhala, H-L., Aho, V. T. E., Fyhrquist, N., Pereira, P. A. B., Kubin, M. E., Paulin, L., Palatsi, R., Auvinen, P., Tasanen, K. & Lauerma, A., Jan 2018, In : Experimental Dermatology. 27, 1, p. 30-36 7 p.

Research output: Contribution to journalArticleScientificpeer-review

Metagenomic and metatranscriptomic analysis of the microbial community in Swiss-type Maasdam cheese during ripening

Duru, I. C., Laine, P. K. S., Andreevskaya, M., Paulin, L. G., Kananen, S., Tynkkynen, S., Auvinen, P. O. V. & Smolander, O-P. A., 19 May 2018, In : International Journal of Food Microbiology. 281, p. 10-22 12 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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Mikrobiomforskning och sjukdomsassociationer

Aho, V. & Auvinen, P., 21 Dec 2018, In : Finska Läkaresällskapets Handlingar. 178, 2, p. 4-9 6 p.

Research output: Contribution to journalArticleProfessional

Open Access
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Nasal mucosa and blood cell transcriptome profiles do not reflect respiratory symptoms associated with moisture damage

Ndika, J., Suojalehto, H., Taubel, M., Lehto, M., Karvala, K., Pallasaho, P., Sund, J., Auvinen, P., Järvi, K., Pekkanen, J., Kinaret, P., Greco, D., Hyvärinen, A. & Alenius, H., Sep 2018, In : Indoor Air. 28, 5, p. 721-731 11 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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The complexity of titin splicing pattern in human adult skeletal muscles

Savarese, M., Jonson, P. H., Huovinen, S., Paulin, L., Auvinen, P., Udd, B. & Hackman, P., 29 Mar 2018, In : Skeletal Muscle. 8, 9 p., 11.

Research output: Contribution to journalArticleScientificpeer-review

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The receptor-like pseudokinase GHR1 is required for stomatal closure

Sierla, M. E., Hõrak, H., Overmyer, K. L., Waszczak, C. M., Yarmolinsky, D., Maierhofer, T., Vainonen, J., Denessiouk, K., Salojärvi, J. T., Laanemets, K., Tõldsepp, K., Vahisalu, T., Gauthier, A. G. B., Puukko, T., Paulin, L., Auvinen, P. O. V., Geiger, D., Hedrich, R., Kollist, H. & Kangasjärvi, J. S., Nov 2018, In : Plant Cell. 30, 11, p. 2813-2837 25 p.

Research output: Contribution to journalArticleScientificpeer-review

Bile microbiota in primary sclerosing cholangitis: Impact on disease progression and development of biliary dysplasia

Pereira, P., Aho, V., Arola, J., Boyd, S., Jokelainen, K., Paulin, L., Auvinen, P. & Farkkila, M., 10 Aug 2017, In : PLoS One. 12, 8, 15 p., 0182924.

Research output: Contribution to journalArticleScientificpeer-review

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De novo assembly of genomes from long sequence reads reveals uncharted territories of Propionibacterium freudenreichii

Deptula, P., Laine, P. K., Roberts, R. J., Smolander, O-P., Vihinen, H., Piironen, V., Paulin, L., Jokitalo, E., Savijoki, K., Auvinen, P. & Varmanen, P., 16 Oct 2017, In : BMC Genomics. 18, 24 p., 790.

Research output: Contribution to journalArticleScientificpeer-review

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Open Access

Functional genomics provides insights into the role of Propionibacterium freudenreichii ssp shermanii JS in cheese ripening

Ojala, T., Laine, P. K. S., Ahlroos, T., Tanskanen, J., Pitkanen, S., Salusjarvi, T., Kankainen, M., Tynkkynen, S., Paulin, L. & Auvinen, P., 16 Jan 2017, In : International Journal of Food Microbiology. 241, p. 39-48 10 p.

Research output: Contribution to journalArticleScientificpeer-review

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Genome sequence of the model plant pathogen Pectobacterium carotovorum SCC1

Niemi, O., Laine, P., Koskinen, P., Pasanen, M., Pennanen, V., Harjunpaa, H., Nykyri, J., Holm, L., Paulin, L., Auvinen, P., Palva, E. T. & Pirhonen, M., 20 Dec 2017, In : Standards in Genomic Sciences. 12, 8 p., 87.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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Genome sequencing and population genomic analyses provide insights into the adaptive landscape of silver birch

Salojärvi, J., Smolander, O-P., Nieminen, K., Rajaraman, S., Safronov, O., Safdari, P., Lamminmäki, A., Immanen, J., Lan, T., Tanskanen, J., Rastas, P., Amiryousefi, A., Jayaprakash, B., Kammonen, J. I., Hagqvist, R., Eswaran, G., Ahonen, V. H., Serra, J. A., Asiegbu, F. O., Barajas-Lopez, J. D. D. & 65 othersBlande, D., Blokhina, O., Blomster, T., Broholm, S., Brosche, M., Cui, F., Dardick, C., Ehonen, S. E., Elomaa, P., Escamez, S., Fagerstedt, K. V., Fujii, H., Gauthier, A., Gollan, P. J., Halimaa, P., Heino, P. I., Himanen, K., Hollender, C., Kangasjarvi, S., Kauppinen, L., Kelleher, C. T., Kontunen-Soppela, S., Koskinen, J. P., Kovalchuk, A., Karenlampi, S. O., Kärkönen, A. K., Lim, K-J., Leppälä, J., Macpherson, L., Mikola, J., Mouhu, K., Mähönen, A. P., Niinemets, U., Oksanen, E., Overmyer, K., Palva, E. T., Pazouki, L., Pennanen, V., Puhakainen, T., Poczai, P., Possen, B. J. H. M., Punkkinen, M., Rahikainen, M. M., Rousi, M., Ruonala, R., van der Schoot, C., Shapiguzov, A., Sierla, M., Sipilä, T. P., Sutela, S., Teeri, T. H., Tervahauta, A. I., Vaattovaara, A., Vahala, J., Vetchinnikova, L., Welling, A., Wrzaczek, M., Xu, E., Paulin, L. G., Schulman, A. H., Lascoux, M., Albert, V. A., Auvinen, P., Helariutta, Y. & Kangasjarvi, J., 8 May 2017, In : Nature Genetics. 49, 6, p. 904-912 12 p.

Research output: Contribution to journalArticleScientificpeer-review

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Loss of cutaneous microbial diversity during first 3 weeks of life in very low birthweight infants

Salava, A., Aho, V., Lybeck, E., Pereira, P., Paulin, L., Nupponen, I., Ranki, A., Auvinen, P., Andersson, S. & Lauerma, A., Oct 2017, In : Experimental Dermatology. 26, 10, p. 861-867 7 p.

Research output: Contribution to journalArticleScientificpeer-review

Massiiviparalleelisekvensointi (NGS) mikrobiologian näkökulmasta - ja miten se liittyy Leo Tolstoihin

Auvinen, E. & Auvinen, P., 2017, In : Moodi.. 41, 4, p. 27-31 5 p.

Research output: Contribution to journalArticleProfessional

More than constipation - bowel symptoms in Parkinson's disease and their connection to gut microbiota

Mertsalmi, T. H., Aho, V. T. E., Pereira, P. A. B., Paulin, L., Pekkonen, E., Auvinen, P. & Scheperjans, F., Nov 2017, In : European Journal of Neurology. 24, 11, p. 1375-1383 9 p.

Research output: Contribution to journalArticleScientificpeer-review

Natural products from lichens

Shishido Joutsen, T. K., Rikkinen, J. K. & Auvinen, P. O. V., 31 Oct 2017, p. 42. 1 p.

Research output: Conference materialsPosterResearchpeer-review

Open Access

Network Analysis Reveals Similar Transcriptomic. Responses to Intrinsic Properties of Carbon Nanomaterials in Vitro and in Vivo

Kinaret, P., Marwah, V., Fortino, V., Ilves, M., Wolff, H., Ruokolainen, L., Auvinen, P., Savolainen, K., Alenius, H. & Greco, D., Apr 2017, In : ACS Nano. 11, 4, p. 3786-3796 11 p.

Research output: Contribution to journalArticleScientificpeer-review

Oral and nasal microbiota in Parkinson's disease

Pereira, P. A. B., Aho, V. T. E., Paulin, L., Pekkonen, E., Auvinen, P. & Scheperjans, F., May 2017, In : Parkinsonism & Related Disorders. 38, p. 61-67 7 p.

Research output: Contribution to journalArticleScientificpeer-review

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Significant disparities in allergy prevalence and microbiota between the young people in Finnish and Russian Karelia

Ruokolainen, L., Paalanen, L., Karkman, A., Laatikainen, T., von Hertzen, L., Vlasoff, T., Markelova, O., Masyuk, V., Auvinen, P., Paulin, L., Alenius, H., Fyhrquist, N., Hanski, I., Mäkelä, M., Zilber, E., Jousilahti, P., Vartiainen, E. & Haahtela, T., May 2017, In : Clinical and Experimental Allergy. 47, 5, p. 665-674 10 p.

Research output: Contribution to journalArticleScientificpeer-review

Skin Microbiome in Small- and Large-plaque Parapsoriasis

Salava, A., Pereira, P., Aho, V., Vakeva, L., Paulin, L., Auvinen, P., Ranki, A. & Lauerma, A., Jun 2017, In : Acta Dermato-Venereologica. 97, 6, p. 685-691 7 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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The Human Microbiome in Parkinson’s Disease and Primary Sclerosing Cholangitis

Bento Pereira, P. A., 22 Sep 2017, Helsinki: University of Helsinki. 99 p.

Research output: ThesisDoctoral ThesisCollection of Articles

Open Access
2016
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Cytokinin and Auxin Display Distinct but Interconnected Distribution and Signaling Profiles to Stimulate Cambial Activity

Immanen, J., Nieminen, K., Smolander, O-P., Kojima, M., Serra, J. A., Koskinen, P., Zhang, J., Elo, A., Mähönen, A. P., Street, N., Bhalerao, R. P., Paulin, L., Auvinen, P., Sakakibara, H. & Helariutta, Y., 8 Aug 2016, In : Current Biology. 26, 15, p. 1990-1997 8 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access

Developmental changes in Scots pine transcriptome during heartwood formation

Lim, K-J., Paasela, T., Harju, A., Venäläinen, M., Paulin, L., Auvinen, P., Kärkkäinen, K. & Teeri, T. H., 2016, In : Plant Physiology. 172, 3, p. 1403-1417 15 p.

Research output: Contribution to journalArticleScientificpeer-review

Divergent genes in potential inoculant Sinorhizobium strains are related to DNA replication, recombination, and repair

Penttinen, P. J., Greco, D., Muntyan, V., Terefework, Z., De Lajudie, P., Roumiantseva, M., Becker, A., Auvinen, P. O. V. & Lindström, A. K., 16 Feb 2016, In : Journal of Basic Microbiology. 56, 6, p. 680-685 6 p.

Research output: Contribution to journalArticleScientificpeer-review

Genome-scale study reveals reduced metabolic adaptability in patients with non-alcoholic fatty liver disease

Hyötyläinen, T., Jerby, L., Petäjä, E. M., Mattila, I., Jäntti, S., Auvinen, P., Gastaldelli, A., Yki-Järvinen, H., Ruppin, E. & Oresic, M., Feb 2016, In : Nature Communications. 7, 9 p., 8994.

Research output: Contribution to journalArticleScientificpeer-review

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HMGB4 is expressed by neuronal cells and affects the expression of genes involved in neural differentiation

Rouhiainen, A., Zhao, X., Vanttola, P., Qian, K., Kulesskiy, E., Kuja-Panula, J., Gransalke, K., Gronholm, M., Unni, E., Meistrich, M., Tian, L., Auvinen, P. & Rauvala, H., 9 Sep 2016, In : Scientific Reports. 6, 16 p., 32960.

Research output: Contribution to journalArticleScientificpeer-review

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NOGO-A/RTN4A and NOGO-B/RTN4B are simultaneously expressed in epithelial, fibroblast and neuronal cells and maintain ER morphology

Rämö, O., Kumar, D., Gucciardo, E., Joensuu, M., Saarekas, M., Vihinen, H., Belevich, I., Smolander, O-P., Qian, K., Auvinen, P. & Jokitalo, E., 27 Oct 2016, In : Scientific Reports. 6, 14 p., 35969.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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Parkinsonin tauti ja mikrobiomi

Auvinen, P. & Scheperjans, F., 2016, In : Suomen lääkärilehti. 71, 35, p. 2102-2103 2 p.

Research output: Contribution to journalArticleProfessional

Open Access
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Skin biomes

Fyhrquist, N. T., Salava, A., Auvinen, P. O. V. & Lauerma, A. I., 2016, In : Current Allergy and Asthma Reports. 16, 5, p. 40 7 p., 40.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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Skin microbiome in melanomas and melanocytic nevi

Salava, A., Aho, V., Pereira, P., Koskinen, K., Paulin, L., Auvinen, P. & Lauerma, A., 2016, In : European Journal of Dermatology. 26, 1, p. 49-55 7 p.

Research output: Contribution to journalArticleScientificpeer-review

Time-scale dynamics of proteome and transcriptome of the white-rot fungus Phlebia radiata: growth on spruce wood and decay effect on lignocellulose

Kuuskeri, J., Häkkinen, M., Laine, P., Smolander, O-P., Tamene, F., Miettinen, S., Nousiainen, P., Kemell, M., Auvinen, P. & Lundell, T., 5 Sep 2016, In : Biotechnology for Biofuels. 9, 22 p., 192.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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2015

Advances in Biotechnology: Relation between the actinobacterial succession and microbial safety in aerobic waste treatment (composting).

Kumar, S. S., Hui, N., Kirsi, M., Dayanand, A., Auvinen, P., Laitinen, S. & Kontro, M., 2015, Advances in Biotechnology: Relation between the actinobacterial succession and microbial safety in aerobic waste treatment (composting).. Nawani, N. N., Khetmalas, M., Razdan, P. N. & Pandey, A. (eds.). New Delhi: I.K. International Publishing House Pvt. Ltd., 12 p.

Research output: Chapter in Book/Report/Conference proceedingChapterProfessional

Comparative Genomics and Characterization of Hybrid Shigatoxigenic and Enterotoxigenic Escherichia coli (STEC/ETEC) Strains

Nyholm, O., Halkilahti, J., Wiklund, G., Okeke, U., Paulin, L., Auvinen, P., Haukka, K. & Siitonen, A., 27 Aug 2015, In : PLoS One. 10, 8, 17 p., 0135936.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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