DALI shines a light on remote homologs: one hundred discoveries

Holm, L., Laiho, A. H. T., Törönen, P. & Guedes Salgado, M. P., Jan 2023, In: Protein Science. 32, 1, 18 p., e4519.

Research output: Contribution to journal › Article › Scientific › peer-review

Global analysis of aging-related protein structural changes uncovers enzyme-polymerization-based control of longevity

Paukštytė, J., López Cabezas, R. M., Feng, Y., Tong, K., Schnyder, D., Elomaa, E., Gregorova, P., Doudin, M., Särkkä, M., Sarameri, J., Lippi, A., Vihinen, H., Juutila, J., Nieminen, A., Törönen, P., Holm, L., Jokitalo, E., Krisko, A., Huiskonen, J., Sarin, L. P., & 4 othersHietakangas, V., Picotti, P., Barral, Y. & Saarikangas, J., 21 Sep 2023, In: Molecular Cell. 83, 18, p. 3360-3376

Research output: Contribution to journal › Article › Scientific › peer-review

The giant diploid faba genome unlocks variation in a global protein crop

Jayakodi, M., Golicz, A. A., Kreplak, J., Fechete, L. I., Angra, D., Bednář, P., Bornhofen, E., Zhang, H., Boussageon, R., Kaur, S., Cheung, K., Čížková, J., Gundlach, H., Hallab, A., Imbert, B., Keeble-Gagnère, G., Koblížková, A., Kobrlová, L., Krejčí, P., Mouritzen, T. W., & 34 othersNeumann, P., Nadzieja, M., Nielsen, L. K., Novák, P., Orabi, J., Padmarasu, S., Robertson-Shersby-Harvie, T., Robledillo, L. Á., Schiemann, A., Tanskanen, J., Törönen, P., Warsame, A. O., Wittenberg, A. H. J., Himmelbach, A., Aubert, G., Courty, P. E., Doležel, J., Holm, L. U., Janss, L. L., Khazaei, H., Macas, J., Mascher, M., Smýkal, P., Snowdon, R. J., Stein, N., Stoddard, F. L., Stougaard, J., Tayeh, N., Torres, A. M., Usadel, B., Schubert, I., O’Sullivan, D. M., Schulman, A. H. & Andersen, S. U., 23 Mar 2023, In: Nature. 615, 7953, p. 652-659 27 p.

Research output: Contribution to journal › Article › Scientific › peer-review

Novel split quality measures for stratified multilabel cross validation with application to large and sparse gene ontology datasets

Tiittanen, H. E., Holm, L. & Törönen, P., 1 Jan 2022, In: Applied computing and intelligence. 2, 1, p. 49-62

Research output: Contribution to journal › Article › Scientific › peer-review

Optimizing InterProScan representation generates a surprisingly good protein function prediction method

Tiittanen, H. E., Holm, L. & Törönen, P., 26 Aug 2022, (Accepted/In press) In: bioRxiv : the preprint server for biology .

Research output: Contribution to journal › Article › Scientific