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Publications 1999 2019

2019

Growth Mode and Carbon Source Impact the Surfaceome Dynamics of Lactobacillus rhamnosus GG

Savijoki, K., Nyman, T. A., Kainulainen, V., Miettinen, I., Siljamäki, P., Fallarero, A., Sandholm, J., Satokari, R. & Varmanen, P., 5 Jun 2019, In : Frontiers in Microbiology.

Research output: Contribution to journalArticleScientificpeer-review

Open Access

Ulosteensiirron nykysuositukset ja uudet sovellukset

Lahtinen, P., Satokari, R., Mattila, E., Anttila, V-J. & Arkkila, P., 2019, In : Duodecim. 135, 2, p. 165-173 9 p.

Research output: Contribution to journalReview ArticleScientificpeer-review

2018

Letter: improvements in mental health after faecal microbiota transplantation-an underexplored treatment-related benefit? Reply

Jalanka, J., Hillamaa, A., Arkkila, P. E. & Satokari, R., Jun 2018, In : Alimentary Pharmacology & Therapeutics. 47, 11, p. 1563-1564 2 p.

Research output: Contribution to journalLetterScientificpeer-review

Long-term colonisation with donor bacteriophages following successful faecal microbial transplantation

Draper, L. A., Ryan, F. J., Smith, M. K., Jalanka, J., Mattila, E., Arkkila, P., Ross, R. P., Satokari, R. & Hill, C., 10 Dec 2018, In : Microbiome. 6, 9 p., 220.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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Maternal gut and breast milk microbiota affect infant gut antibiotic resistome and mobile genetic elements

Pärnänen, K., Karkman, A., Hultman, J., Lyra, C., Bengtsson-Palme, J., Larsson, D. G. J., Rautava, S., Isolauri, E., Salminen, S., Kumar, H., Satokari, R. & Virta, M., 24 Sep 2018, In : Nature Communications. 9, 11 p., 3891.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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Perinatal host-microbe interactions in the mammalian intestine

Husso, A., Alipour, M., Jalanka, J., Pessa-Morikawa, T., Kokkonen, T., Satokari, R., Hynönen, U., Iivanainen, A. & Niku, M., 18 Jul 2018. 1 p.

Research output: Conference materialsPosterResearchpeer-review

The composition of the perinatal intestinal microbiota in cattle

Alipour, M. J., Jalanka, J., Pessa-Morikawa, T., Kokkonen, T., Satokari, R., Hynönen, U., Iivanainen, A. & Niku, M., 11 Jul 2018, In : Scientific Reports. 8, 14 p., 10437.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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The Potential of Gut Commensals in Reinforcing Intestinal Barrier Function and Alleviating Inflammation

Hiippala, K., Jouhten, H., Ronkainen, A., Hartikainen, A., Kainulainen, V., Jalanka, J. & Satokari, R., 29 Jul 2018, In : Nutrients. 10, 8, 23 p., 988.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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2017

Consensus report: faecal microbiota transfer - clinical applications and procedures

Koenig, J., Siebenhaar, A., Hoegenauer, C., Arkkila, P., Nieuwdorp, M., Noren, T., Ponsioen, C. Y., Rosien, U., Rossen, N. G., Satokari, R., Stallmach, A., de Vos, W., Keller, J. & Brummer, R. J., Jan 2017, In : Alimentary Pharmacology & Therapeutics. 45, 2, p. 222-239 18 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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European consensus conference on faecal microbiota transplantation in clinical practice

Cammarota, G., Ianiro, G., Tilg, H., Rajilic-Stojanovic, M., Kump, P., Satokari, R., Sokol, H., Arkkila, P., Pintus, C., Hart, A., Segal, J., Aloi, M., Masucci, L., Molinaro, A., Scaldaferri, F., Gasbarrini, G., Lopez-Sanroman, A., Link, A., De Groot, P., de Vos, W. M. & 9 othersHoegenauer, C., Malfertheiner, P., Mattila, E., Milosavljevic, T., Nieuwdorp, M., Sanguinetti, M., Simren, M., Gasbarrini, A. & European FMT Working Grp, Apr 2017, In : Gut. 66, 4, p. 569-580 12 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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Faecal microbiota transplantation in patients with Clostridium difficile and significant comorbidities as well as in patients with new indications: A case series

Lahtinen, P., Mattila, E., Anttila, V-J., Tillonen, J., Teittinen, M., Nevalainen, P., Salminen, S., Satokari, R. & Arkkila, P., 21 Oct 2017, In : World Journal of Gastroenterology. 23, 39, p. 7174-7184 11 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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Feasibility of Metatranscriptome Analysis from Infant Gut Microbiota: Adaptation to Solid Foods Results in Increased Activity of Firmicutes at Six Months

Hugenholtz, F., Ritari, J., Nylund, L., Davids, M., Satokari, R. & Vos, W. M. D., 2017, In : International Journal of Microbiology. 2017, 9 p., 9547063.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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Pili-like proteins of Akkermansia muciniphila modulate host immune responses and gut barrier function

Ottman, N., Reunanen, J., Meijerink, M., Pietilä, T., Kainulainen, V., Klievink, J., Huuskonen, L., Aalvink, S., Skurnik, M., Boeren, S., Satokari, R., Mercenier, A., Palva, A., Smidt, H., de Vos, W. M. & Belzer, C., 1 Mar 2017, In : PLoS One. 12, 3, 18 p., 0173004.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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2016

Bacterial richness and the ratio of Bacteroidetes to γ-Proteobacteria are decreased in the colonic mucosa of pediatric ulcerative colitis

Kalliomäki, M., Cheng, J., Hiippala, K. A., Ritari, J., MATTILA, P., Kainulainen, V. L., Salojärvi, J. T. & Satokari, R. M., 25 May 2016.

Research output: Conference materialsAbstractResearchpeer-review

Discordant temporal development of bacterial phyla and the emergence of core in the fecal microbiota of young children

Cheng, J., Ringel-Kulka, T., Heikamp-de Jong, I., Ringel, Y., Carroll, I., de Vos, W. M., Salojarvi, J. & Satokari, R., Apr 2016, In : ISME Journal. 10, 4, p. 1002-1014 13 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access

Isolation and whole genome sequencing of a Ruminococcus-like bacterium, associated with irritable bowel syndrome

Hynönen, U., Rasinkangas, P., Satokari, R., Paulin, L., de Vos, W. M., Pietilä, T. E., Kant, R. & Palva, A., Jun 2016, In : Anaerobe. 39, p. 60-67 8 p.

Research output: Contribution to journalArticleScientificpeer-review

Lactobacillus rhamnosus GG Outcompetes Enterococcus faecium via Mucus-Binding Pili: Evidence for a Novel and Heterospecific Probiotic Mechanism

Tytgat, H. L. P., Douillard, F. P., Reunanen, J., Rasinkangas, P., Hendrickx, A. P. A., Laine, P. K., Paulin, L., Satokari, R. & de Vos, W. M., Oct 2016, In : Applied and Environmental Microbiology. 82, 19, p. 5756-5762 7 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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Mucosal Prevalence and Interactions with the Epithelium Indicate Commensalism of Sutterella spp.

Hiippala, K., Kainulainen, V., Kalliomaki, M., Arkkila, P. & Satokari, R., 26 Oct 2016, In : Frontiers in Microbiology. 7, 13 p., 1706.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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Probiotic Gut Microbiota Isolate Interacts with Dendritic Cells via Glycosylated Heterotrimeric Pili

Tytgat, H. L. P., van Teijlingen, N. H., Sullan, R. M. A., Douillard, F. P., Rasinkangas, P., Messing, M., Reunanen, J., Satokari, R., Vanderleyden, J., Dufrene, Y. F., Geijtenbeek, T. B. H., de Vos, W. M. & Lebeer, S., 17 Mar 2016, In : PLoS One. 11, 3, 19 p., 0151824.

Research output: Contribution to journalArticleScientificpeer-review

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2015

Akkermansia muciniphila Adheres to Enterocytes and Strengthens the Integrity of the Epithelial Cell Layer

Reunanen, J., Kainulainen, V., Huuskonen, L., Ottman, N., Belzer, C., Huhtinen, H., de Vos, W. M. & Satokari, R., Jun 2015, In : Applied and Environmental Microbiology. 81, 11, p. 3655-3662 8 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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Contentious host-microbiota relationship in inflammatory bowel disease - can foes become friends again?

Satokari, R., Jan 2015, In : Scandinavian Journal of Gastroenterology. 50, 1, p. 34-42 9 p.

Research output: Contribution to journalArticleScientificpeer-review

Genome Sequence of the Butyrate-Producing Anaerobic Bacterium Anaerostipes hadrus PEL 85

Kant, R., Rasinkangas, P., Satokari, R. M., Pietilä, T. E. & Palva, A., Apr 2015, In : Genome Announcements. 3, 2, 2 p., e00224-15.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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Lactobacillus rhamnosus GG and its SpaC pilus adhesin modulate inflammatory responsiveness and TLR-related gene expression in the fetal human gut

Ganguli, K., Collado, M. C., Rautava, J., Lu, L., Satokari, R., von Ossowski, I., Reunanen, J., de Vos, W. M., Palva, A., Isolauri, E., Salminen, S., Walker, W. A. & Rautava, S., Apr 2015, In : Pediatric Research. 77, 4, p. 528-535 8 p.

Research output: Contribution to journalArticleScientificpeer-review

Severity of atopic disease inversely correlates with intestinal microbiota diversity and butyrate-producing bacteria

Nylund, L., Nermes, M., Isolauri, E., Salminen, S., de Vos, W. M. & Satokari, R., Feb 2015, In : Allergy : European journal of allergy and clinical immunology. 70, 2, p. 241-244 4 p.

Research output: Contribution to journalArticleScientificpeer-review

2014

Fecal Transplantation Treatment of Antibiotic-Induced, Noninfectious Colitis and Long-Term Microbiota Follow-Up

Satokari, R. M., Susana, F., Mattila, E., Jalanka, J. K., Vos de, W. M. & Arkkila, P., 2014, In : Case reports in medicine. 2014, 7 p., 913867.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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Immunostimulatory CpG motifs in the genomes of gut bacteria and their role in human health and disease

Kant, R., Vos de, W. M., Palva, A. & Satokari, R. M., 2014, In : Journal of Medical Microbiology. 63, Pt. 2, p. 293-308 16 p.

Research output: Contribution to journalArticleScientificpeer-review

Intestinal microbiota during early life - impact on health and disease

Nylund, L., Satokari, R., Salminen, S. & de Vos, W. M., Nov 2014, In : Proceedings of the Nutrition Society. 73, 4, p. 457-469 13 p.

Research output: Contribution to journalArticleScientificpeer-review

2013

BopA Does Not Have a Major Role in the Adhesion of Bifidobacterium bifidum to Intestinal Epithelial Cells, Extracellular Matrix Proteins, and Mucus

Kainulainen, V., Reunanen, J., Hiippala, K., Guglielmetti, S., Vesterlund, S., Palva, A. & Satokari, R., Nov 2013, In : Applied and Environmental Microbiology. 79, 22, p. 6989-6997 9 p.

Research output: Contribution to journalArticleScientificpeer-review

Comparative genomic and functional analysis of 100 Lactobacillus rhamnosus strains and their comparison with strain GG

Douillard, F. P., Ribbera, A., Kant, R., Pietilä, T. E., Järvinen, H. M., Messing, M., Randazzo, C. L., Paulin, L., Laine, P., Ritari, J., Caggia, C., Lähteinen, T., Brouns, S. J. J., Satokari, R., von Ossowski, I., Reunanen, J., Palva, A. & Vos de, W. M., 15 Aug 2013, In : PLoS Genetics. 9, 8, 15 p., e1003683.

Research output: Contribution to journalArticleScientificpeer-review

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Comparative genomic and functional analysis of Lactobacillus casei and Lactobacillus rhamnosus strains marketed as probiotics

Douillard, F. P., Ribbera, A., Järvinen, H. M., Kant, R., Pietilä, T. E., Randazzo, C., Paulin, L., Laine, P. K., Caggia, C., von Ossowski, I., Reunanen, J., Satokari, R., Salminen, S., Palva, A. & de Vos, W. M., Mar 2013, In : Applied and Environmental Microbiology. 79, 6, p. 1923-1933 11 p.

Research output: Contribution to journalArticleScientificpeer-review

Contribution of the Intestinal Microbiota to Human Health - from Birth to 100 Years of Age.

Cheng, J., Palva, A. M., de Vos, W. M. & Satokari, R., 2013, In : Current Topics in Microbiology and Immunology. 358, p. 323-346 24 p.

Research output: Contribution to journalReview ArticleScientificpeer-review

Duodenal microbiota composition and mucosal homeostasis in pediatric celiac disease

Cheng, J., Kalliomaki, M., Heilig, H. G. H. J., Palva, A., Lahteenoja, H., de Vos, W. M., Salojarvi, J. & Satokari, R., 11 Jul 2013, In : BMC Gastroenterology. 13, Article Number: 113, 13 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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Interaction of Campylobacter spp. and Human Probiotics in Chicken Intestinal Mucus

Ganan, M., Martinez-Rodriguez, A. J., Carrascosa, A. V., Vesterlund, S., Salminen, S. & Satokari, R., Mar 2013, In : Zoonoses and Public Health. 60, 2, p. 141-148 8 p.

Research output: Contribution to journalArticleScientificpeer-review

Intestinal Microbiota in Healthy US Young Children and Adults-A High Throughput Microarray Analysis

Ringel-Kulka, T., Cheng, J., Ringel, Y., Salojarvi, J., Carroll, I., Palva, A., de Vos, W. M. & Satokari, R., 23 May 2013, In : PLoS One. 8, 5, p. Article Number: e64315 10 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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Microarray analysis reveals marked intestinal microbiota aberrancy in infants having eczema compared to healthy children in at-risk for atopic disease

Nylund, L., Satokari, R., Nikkila, J., Rajilic-Stojanovic, M., Kalliomaki, M., Isolauri, E., Salminen, S. & de Vos, W. M., 23 Jan 2013, In : BMC Microbiology. 13, 11 p., 12.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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Using recombinant lactococci as an approach to dissect the immunomodulating capacity of surface piliation in probiotic Lactobacillus rhamnosus GG

von Ossowski, I., Pietilä, T. E., Rintahaka, J., Nummenmaa, E., Mäkinen, V-M., Reunanen, J., Satokari, R., de Vos, W. M., Palva, I. & Palva, A., 14 May 2013, In : PLoS One. 8, 5, 12 p., e64416.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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2012

Expression of Microbiota, Toll-like Receptors, and Their Regulators in the Small Intestinal Mucosa in Celiac Disease

Kalliomäki, M., Satokari, R., Lähteenoja, H., Vähämiko, S., Grönlund, J., Routi, T. & Salminen, S., 2012, In : Journal of Pediatric Gastroenterology and Nutrition. 54, 6, p. 727-732 6 p.

Research output: Contribution to journalArticleScientificpeer-review

2011

Functional characterization of a mucus-specific LPXTG surface adhesin from probiotic Lactobacillus rhamnosus GG

von Ossowski, I., Satokari, R., Reunanen, J., Lebeer, S., De Keersmaecker, S. C. J., Vanderleyden, J., de Vos, W. M. & Palva, A., 2011, In : Applied and Environmental Microbiology. 77, 13, p. 4465-4472 8 p.

Research output: Contribution to journalArticleScientificpeer-review

2010

Novel peptides and methods for producing them

Vos de, W. M., Palva, A., Palva, I., Reunanen, J., von Ossowski, I., Satokari, R. M., Vesterlund, S., Kankainen, M., Salusjärvi, T. & Tynkkynen, S., 5 Aug 2010, Patent No. WO2010086512, US 2010196524

Research output: PatentScientific

Semi-automated extraction of microbial DNA from feces for qPCR and phylogenetic microarray analysis

Nylund, L., Heilig, H. G. H. J., Salminen, S., de Vos, W. M. & Satokari, R., 2010, In : Journal of Microbiological Methods. 83, p. 231-235 5 p.

Research output: Contribution to journalArticleScientificpeer-review

Through Ageing, and Beyond: Gut Microbiota and Inflammatory Status in Seniors and Centenarians

Biagi, E., Nylund, L., Candela, M., Ostan, R., Bucci, L., Pini, E., Nikkilä, J. T., Monti, D., Satokari, R., Franceschi, C., Brigidi, P. & De Vos, W., 2010, In : PLoS One. 5, 5, p. e10667 14 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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2009

Bifidobacterium and Lactobacillus DNA in the human placenta

Satokari, R., Gronroos, T., Laitinen, K., Salminen, S. & Isolauri, E., 2009, In : Letters in Applied Microbiology. 48, 1, p. 8-12 5 p.

Research output: Contribution to journalArticleScientificpeer-review

2008

Real-time analysis of PCR inhibition on microfluidic materials

Kolari, K., Satokari, R., Kataja, K., Stenman, J. & Hokkanen, A., 2008, In : Sensors and Actuators B: Chemical. 128, 2, p. 442-449 8 p.

Research output: Contribution to journalArticleScientificpeer-review

TRAC in high-content gene expression analysis: applications in microbial population studies, process biotechnology and biomedical research

Rautio, J. J., Satokari, R., Vehmaan-Kreula, P., Serkkola, E. & Soderlund, H., 2008, In : Expert Review of Molecular Diagnostics. 8, 4, p. 379-385 7 p.

Research output: Contribution to journalReview ArticleScientificpeer-review