Samuel Kaski

Publications

Research output per year 1996 2005 2007 2009 2010 2011 2013 2014 2015 2024

• 95 Conference contribution
• 90 Article
• 14 Anthology or special issue
• 7 Chapter
• 13 More
  • 6 Conference article
  • 3 Patent
  • 1 Abstract
  • 1 Other conference material
  • 1 Paper
  • 1 Review Article

Research output per year

Research output per year

Search results

• 2024

  Bayesian reduced rank regression models generalizable neural fingerprints that differentiate between individuals in magnetoencephalography data

  Haakana, J., Merz, S., Kaski, S., Renvall, H. & Salmelin, R., 2024, In: European Journal of Neuroscience. 59, 9, p. 2320-2335 6 p.

  Research output: Contribution to journal › Article › Scientific › peer-review

  Open Access

  File

• Collaborative learning from distributed data with differentially private synthetic data

  Prediger, L., Jälkö, J., Honkela, A. & Kaski, S., 14 Jun 2024, In: BMC Medical Informatics and Decision Making. 24, 1, 14 p., 167.

  Research output: Contribution to journal › Article › Scientific › peer-review

  Open Access

  File

• Estimating treatment effects from single-arm trials via latent-variable modeling

  Haußmann, M., Le, T. M. S., Halla-Aho, V., Kurki, S., Leinonen, J. V., Koskinen, M., Kaski, S. & Lähdesmäki, H., 2024, In: Proceedings of Machine Learning Research. 238, p. 2926-2934 9 p.

  Research output: Contribution to journal › Conference article › Scientific › peer-review

• INPUT-GRADIENT SPACE PARTICLE INFERENCE FOR NEURAL NETWORK ENSEMBLES

  Trinh, T., Heinonen, M., Acerbi, L. & Kaski, S., 2024, The Twelfth International Conference on Learning Representations.

  Research output: Chapter in Book/Report/Conference proceeding › Chapter › Scientific › peer-review

  Open Access

  File

• Intelligent digital tools for screening of brain connectivity and dementia risk estimation in people affected by mild cognitive impairment: the AI-Mind clinical study protocol

  Haraldsen, I. H., Hatlestad-Hall, C., Marra, C., Renvall, H., Maestu, F., Acosta-Hernandez, J., Alfonsin, S., Andersson, V., Anand, A., Ayllon, V., Babic, A., Belhadi, A., Birck, C., Bruna, R., Caraglia, N., Carrarini, C., Christensen, E., Cicchetti, A., Daugbjerg, S. & Di Bidino, R. & 49 others, Diaz-Ponce, A., Drews, A., Giuffre, G. M., Georges, J., Gil-Gregorio, P., Gove, D., Govers, T. M., Hallock, H., Hietanen, M., Holmen, L., Hotta, J., Kaski, S., Khadka, R., Kinnunen, A. S., Koivisto, A. M., Kulashekhar, S., Larsen, D., Liljeström, M., Lind, P. G., Marcos Dolado, A., Marshall, S., Merz, S., Miraglia, F., Montonen, J., Maentynen, V., Oksengard, A. R., Olazaran, J., Paajanen, T., Pena, J. M., Pena, L., Peniche, D. L., Perez, A. S., Radwan, M., Ramirez-Torano, F., Rodriguez-Pedrero, A., Saarinen, T., Salas-Carrillo, M., Salmelin, R., Sousa, S., Suyuthi, A., Toft, M., Toharia, P., Tveitstol, T., Tveter, M., Upreti, R., Vermeulen, R. J., Vecchio, F., Yazidi, A. & Rossini, P. M., 5 Jan 2024, In: Frontiers in Neurorobotics. 17, 15 p., 1289406.

  Research output: Contribution to journal › Article › Scientific › peer-review

  Open Access

• Prior Knowledge Elicitation: The Past, Present, and Future

  Mikkola, P., Martin, O. A., Chandramouli, S., Hartmann, M., Pla, O. A., Thomas, O., Pesonen, H., Corander, J., Vehtari, A., Kaski, S., Bürkner, P. C. & Klami, A., Dec 2024, In: Bayesian analysis. 19, 4, p. 1129-1161 33 p.

  Research output: Contribution to journal › Article › Scientific › peer-review

  Open Access

  File

• Virtual laboratories: Transforming research with AI

  Klami, A., Damoulas, T., Engkvist, O., Rinke, P. & Kaski, S., 27 Aug 2024, In: Data-Centric Engineering. 5, e19.

  Research output: Contribution to journal › Article › Scientific › peer-review

  Open Access

  File
• 2023

  ABC of the future

  Pesonen, H., Simola, U., Köhn-Luque, A., Vuollekoski, H., Lai, X., Frigessi, A., Kaski, S., Frazier, D. T., Maneesoonthorn, W., Martin, G. M. & Corander, J., Aug 2023, In: International Statistical Review. 91, 2, p. 243-268 26 p.

  Research output: Contribution to journal › Article › Scientific › peer-review

  Open Access

  File

• Characterizing personalized effects of family information on disease risk using graph representation learning

  Wharrie, S., Yang, Z., Ganna, A. & Kaski, S., 2023, In: Proceedings of Machine Learning Research. 219, p. 824-845 22 p.

  Research output: Contribution to journal › Conference article › Scientific › peer-review

• HAPNEST: efficient, large-scale generation and evaluation of synthetic datasets for genotypes and phenotypes

  Wharrie, S., Yang, Z., Raj, V., Monti, R., Gupta, R., Wang, Y., Martin, A., O'Connor, L. J., Kaski, S., Marttinen, P., Palamara, P. F., Lippert, C. & Ganna, A., 1 Sept 2023, In: Bioinformatics. 39, 9, 10 p., btad535.

  Research output: Contribution to journal › Article › Scientific › peer-review

  Open Access

  File

• Online Simulator-Based Experimental Design for Cognitive Model Selection

  Aushev, A., Putkonen, A., Clarté, G., Chandramouli, S., Acerbi, L., Kaski, S. & Howes, A., 21 Sept 2023, In: Computational Brain and Behavior.

  Research output: Contribution to journal › Article › Scientific › peer-review

  Open Access

  File

• Stochastic cluster embedding

  Yang, Z., Chen, Y., Sedov, D., Kaski, S. & Corander, J., Feb 2023, In: Statistics and Computing. 33, 1, 14 p., 12.

  Research output: Contribution to journal › Article › Scientific › peer-review

  Open Access

  File
• 2022

  EntityBot: Actionable Entity Recommendations for Everyday Digital Task

  Vuong, T., Andolina, S., Jacucci, G., Daee, P., Klouche, K., Sjöberg, M., Ruotsalo, T. & Kaski, S., 27 Apr 2022.

  Research output: Conference materials › Abstract › peer-review

• Gene-gene interaction detection with deep learning

  Cui, T., El Mekkaoui, K., Reinvall, J., Havulinna, A. S., Marttinen, P. & Kaski, S., 12 Nov 2022, In: Communications Biology. 5, 1, 12 p., 1238.

  Research output: Contribution to journal › Article › Scientific › peer-review

  Open Access

  File

• Informative Bayesian Neural Network Priors for Weak Signals

  Cui, T., Havulinna, A., Marttinen, P. & Kaski, S., Dec 2022, In: Bayesian analysis. 17, 4, p. 1121-1151 31 p.

  Research output: Contribution to journal › Article › Scientific › peer-review

  Open Access

  File

• Tackling covariate shift with node-based Bayesian neural networks

  Trinh, T. Q., Heinonen, M., Acerbi, L. & Kaski, S., 2022, Proceedings of the 39th International Conference on Machine Learning. Journal of Machine Learning Research, p. 21751-21775 (Proceedings of Machine Learning Research; vol. 162).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Scientific › peer-review

  Open Access

  File
• 2021

  Behaviour-Conditioned Policies for Cooperative Reinforcement Learning Tasks

  Keurulainen, A., Westerlund, I., Kwiatkowski, A., Kaski, S. & Ilin, A., 2021, Artificial Neural Networks and Machine Learning – ICANN 2021 - 30th International Conference on Artificial Neural Networks, Proceedings. Farkaš, I., Masulli, P., Otte, S. & Wermter, S. (eds.). Cham: Springer, p. 493-504 12 p. (Lecture Notes in Computer Science ; vol. 12894).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Scientific › peer-review

• Decision Rule Elicitation for Domain Adaptation

  Nikitin, A. & Kaski, S., 14 Apr 2021, 26th International Conference on Intelligent User Interfaces, IUI 2021. Association for Computing Machinery, p. 244-248 5 p.

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Scientific › peer-review

• De-randomizing MCMC dynamics with the diffusion Stein operator

  Shen, Z., Heinonen, M. & Kaski, S., 2021, Advances in Neural Information Processing Systems 34 - 35th Conference on Neural Information Processing Systems, NeurIPS 2021. Ranzato, M., Beygelzimer, A., Dauphin, Y., Liang, P. S. & Wortman Vaughan, J. (eds.). Neural Information Processing Systems Foundation, p. 17507-17517 11 p. (Advances in Neural Information Processing Systems; vol. 21).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Scientific › peer-review

  Open Access

  File

• Differentially Private Bayesian Inference for Generalized Linear Models

  Kulkarni, T., Jälkö, J., Koskela, A., Kaski, S. & Honkela, A., 2021, Proceedings of the 38th International Conference on Machine Learning, PMLR. Meila, M. & Zhang, T. (eds.). Journal of Machine Learning Research, p. 5838-5849 12 p. (Proceedings of Machine Learning Research; vol. 139).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Scientific › peer-review

  Open Access

  File

• EntityBot: Supporting Everyday Digital Tasks with Entity Recommendations

  Vuong, T. T., Andolina, S., Jacucci, G., Daee, P., Klouche, K., Sjöberg, M., Ruotsalo, T. & Kaski, S., 13 Sept 2021, p. 753–756. 4 p.

  Research output: Conference materials › Other conference material › peer-review

• Entity Recommendation for Everyday Digital Tasks

  Jacucci, G., Daee, P., Vuong, T., Andolina, S., Klouche, K., Sjöberg, M., Ruotsalo, T. & Kaski, S., Oct 2021, In: ACM Transactions on Computer - Human Interaction. 28, 5, 41 p., 29.

  Research output: Contribution to journal › Article › Scientific › peer-review

  Open Access

  File

• Federated Stochastic Gradient Langevin Dynamics

  Mekkaoui, K. E., Mesquita, D., Blomstedt, P. & Kaski, S., 2021, p. 1703-1712. 10 p.

  Research output: Conference materials › Paper › peer-review

  Open Access

  File

• Learning to Assist Agents by Observing Them

  Keurulainen, A., Westerlund, I., Kaski, S. & Ilin, A., 2021, Artificial Neural Networks and Machine Learning – ICANN 2021 - 30th International Conference on Artificial Neural Networks, Proceedings. Farkaš, I., Masulli, P., Otte, S. & Wermter, S. (eds.). Springer, p. 519-530 12 p. (Lecture Notes in Computer Science; vol. 12894).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Scientific › peer-review

• Privacy-preserving data sharing via probabilistic modeling

  Jalko, J., Lagerspetz, E., Haukka, J., Tarkoma, S., Honkela, A. & Kaski, S., 9 Jul 2021, In: Patterns. 2, 7, 10 p., 100271.

  Research output: Contribution to journal › Article › Scientific › peer-review

  Open Access

  File
• 2020

  A high-performance implementation of Bayesian matrix factorization with limited communication

  Vander Aa, T., Qin, X., Blomstedt, P., Wuyts, R., Verachtert, W. & Kaski, S., 2020, Computational Science – ICCS 2020 : 20th International Conference Amsterdam, The Netherlands, June 3–5, 2020 : Proceedings, Part VI. Krzhizhanovskaya, V. V., Závodszky, G., Lees, M. H., Sloot, P. M. A., Sloot, P. M. A., Sloot, P. M. A., Dongarra, J. J., Brissos, S. & Teixeira, J. (eds.). Cham: Springer Nature Switzerland AG, p. 3-16 14 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 12142 LNCS).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Scientific › peer-review

• Interactive faceted query suggestion for exploratory search: Whole-session effectiveness and interaction engagement

  Ruotsalo, T., Jacucci, G. & Kaski, S., Jul 2020, In: Journal of the Association for Information Science and Technology. 71, 7, p. 742-756 15 p.

  Research output: Contribution to journal › Article › Scientific › peer-review

  Open Access

  File

• Plasmids Shaped the Recent Emergence of the Major Nosocomial Pathogen Enterococcus faecium

  Arredondo-Alonso, S., Top, J., McNally, A., Puranen, S., Pesonen, M., Pensar, J., Marttinen, P., Braat, J. C., Rogers, M. R. C., van Schaik, W., Kaski, S., Willems, R. J. L., Corander, J. & Schurch, A. C., 11 Feb 2020, In: mBio. 11, 1, 17 p., e03284-19.

  Research output: Contribution to journal › Article › Scientific › peer-review

  Open Access

  File
• 2019

  Community assessment to advance computational prediction of cancer drug combinations in a pharmacogenomic screen

  Menden, M. P., Wang, D., Mason, M. J., Szalai, B., Bulusu, K. C., Guan, Y., Yu, T., Kang, J., Jeon, M., Wolfinger, R., Nguyen, T., Zaslavskiy, M., Abante, J., Abecassis, B. S., Aben, N., Aghamirzaie, D., Aittokallio, T., Akhtari, F. S., Al-lazikani, B. & Alam, T. & 280 others, Allam, A., Allen, C., de Almeida, M. P., Altarawy, D., Alves, V., Amadoz, A., Anchang, B., Antolin, A. A., Ash, J. R., Aznar, V. R., Ba-alawi, W., Bagheri, M., Bajic, V., Ball, G., Ballester, P. J., Baptista, D., Bare, C., Bateson, M., Bender, A., Bertrand, D., Wijayawardena, B., Boroevich, K. A., Bosdriesz, E., Bougouffa, S., Bounova, G., Brouwer, T., Bryant, B., Calaza, M., Calderone, A., Calza, S., Capuzzi, S., Carbonell-Caballero, J., Carlin, D., Carter, H., Castagnoli, L., Celebi, R., Cesareni, G., Chang, H., Chen, G., Chen, H., Chen, H., Cheng, L., Chernomoretz, A., Chicco, D., Cho, K.-H., Cho, S., Choi, D., Choi, J., Choi, K., Choi, M., Cock, M. D., Coker, E., Cortes-Ciriano, I., Cserzö, M., Cubuk, C., Curtis, C., Daele, D. V., Dang, C. C., Dijkstra, T., Dopazo, J., Draghici, S., Drosou, A., Dumontier, M., Ehrhart, F., Eid, F.-E., ElHefnawi, M., Elmarakeby, H., van Engelen, B., Engin, H. B., de Esch, I., Evelo, C., Falcao, A. O., Farag, S., Fernandez-Lozano, C., Fisch, K., Flobak, A., Fornari, C., Foroushani, A. B. K., Fotso, D. C., Fourches, D., Friend, S., Frigessi, A., Gao, F., Gao, X., Gerold, J. M., Gestraud, P., Ghosh, S., Gillberg, J., Godoy-Lorite, A., Godynyuk, L., Godzik, A., Goldenberg, A., Gomez-Cabrero, D., Gonen, M., de Graaf, C., Gray, H., Grechkin, M., Guimera, R., Guney, E., Haibe-Kains, B., Han, Y., Hase, T., He, D., He, L., Heath, L. S., Hellton, K. H., Helmer-Citterich, M., Hidalgo, M. R., Hidru, D., Hill, S. M., Hochreiter, S., Hong, S., Hovig, E., Hsueh, Y.-C., Hu, Z., Huang, J. K., Huang, R. S., Hunyady, L., Hwang, J., Hwang, T. H., Hwang, W., Hwang, Y., Isayev, O., Don’t Walk, O. B., Jack, J., Jahandideh, S., Ji, J., Jo, Y., Kamola, P. J., Kanev, G. K., Karacosta, L., Karimi, M., Kaski, S., Kazanov, M., Khamis, A. M., Khan, S. A., Kiani, N. A., Kim, A., Kim, J., Kim, J., Kim, K., Kim, K., Kim, S., Kim, Y., Kim, Y., Kirk, P. D. W., Kitano, H., Klambauer, G., Knowles, D., Ko, M., Kohn-Luque, A., Kooistra, A. J., Kuenemann, M. A., Kuiper, M., Kurz, C., Kwon, M., van Laarhoven, T., Laegreid, A., Lederer, S., Lee, H., Lee, J., Lee, Y. W., Lepp_aho, E., Lewis, R., Li, J., Li, L., Liley, J., Lim, W. K., Lin, C., Liu, Y., Lopez, Y., Low, J., Lysenko, A., Machado, D., Madhukar, N., Maeyer, D. D., Malpartida, A. B., Mamitsuka, H., Marabita, F., Marchal, K., Marttinen, P., Mason, D., Mazaheri, A., Mehmood, A., Mehreen, A., Michaut, M., Miller, R. A., Mitsopoulos, C., Modos, D., Moerbeke, M. V., Moo, K., Motsinger-Reif, A., Movva, R., Muraru, S., Muratov, E., Mushthofa, M., Nagarajan, N., Nakken, S., Nath, A., Neuvial, P., Newton, R., Ning, Z., Niz, C. D., Oliva, B., Olsen, C., Palmeri, A., Panesar, B., Papadopoulos, S., Park, J., Park, S., Park, S., Pawitan, Y., Peluso, D., Pendyala, S., Peng, J., Perfetto, L., Pirro, S., Plevritis, S., Politi, R., Poon, H., Porta, E., Prellner, I., Preuer, K., Pujana, M. A., Ramnarine, R., Reid, J. E., Reyal, F., Richardson, S., Ricketts, C., Rieswijk, L., Rocha, M., Rodriguez-Gonzalvez, C., Roell, K., Rotroff, D., de Ruiter, J. R., Rukawa, P., Sadacca, B., Safikhani, Z., Safitri, F., Sales-Pardo, M., Sauer, S., Schlichting, M., Seoane, J. A., Serra, J., Shang, M.-M., Sharma, A., Sharma, H., Shen, Y., Shiga, M., Shin, M., Shkedy, Z., Shopsowitz, K., Sinai, S., Skola, D., Smirnov, P., Soerensen, I. F., Soerensen, P., Song, J.-H., Song, S. O., Soufan, O., Spitzmueller, A., Steipe, B., Suphavilai, C., Tamayo, S. P., Tamborero, D., Tang, J., Tanoli, Z.-U.-R., Tarres-Deulofeu, M., Tegner, J., Thommesen, L., Tonekaboni, S. A. M., Tran, H., Troyer, E. D., Truong, A., Tsunoda, T., Turu, G., Tzeng, G.-Y., Verbeke, L., Videla, S. & Consortium, A.-S. D. C. D., 17 Jun 2019, In: Nature Communications. 10, 1, 17 p., 2674.

  Research output: Contribution to journal › Article › Scientific › peer-review

  Open Access

  File

• Integrating neurophysiologic relevance feedback in intent modeling for information retrieval

  Jacucci, G., Barral, O., Daee, P., Wenzel, M., Serim, B., Ruotsalo, T., Pluchino, P., Freeman, J., Gamberini, L., Kaski, S. & Blankertz, B., Sept 2019, In: Journal of the Association for Information Science and Technology. 70, 9, p. 917-930 14 p.

  Research output: Contribution to journal › Article › Scientific › peer-review

  Open Access

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• Representation transfer for differentially private drug sensitivity prediction

  Niinimäki, T., Heikkilä, M. A., Honkela, A. & Kaski, S., 5 Jul 2019, In: Bioinformatics. 35, 14, p. i218-i224 7 p.

  Research output: Contribution to journal › Article › Scientific › peer-review

  Open Access

  File

• Resolving outbreak dynamics using approximate bayesian computation for stochastic birth–death models [version 2; peer review: 2 approved]

  Lintusaari, J., Blomstedt, P., Rose, B., Sivula, T., Gutmann, M. U., Kaski, S. & Corander, J., 2019, In: Wellcome open research. 4, 26 p., 14.

  Research output: Contribution to journal › Article › Scientific › peer-review

  Open Access

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• Scalable Bayesian non-linear matrix completion

  Qin, X., Blomstedt, P. & Kaski, S., 2019, IJCAI International Joint Conference on Artificial Intelligence. Kraus, S. (ed.). International Joint Conferences on Artificial Intelligence, p. 3275-3281 7 p.

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Scientific › peer-review

• 2018

  Improving genomics-based predictions for precision medicine through active elicitation of expert knowledge

  Sundin, I., Peltola, T., Micallef, L., Afrabandpey, H., Soare, M., Majumder, M. M., Daee, P., He, C., Serim, B., Havulinna, A., Heckman, C., Jacucci, G., Marttinen, P. & Kaski, S., 1 Jul 2018, In: Bioinformatics. 34, 13, p. 395-403 9 p.

  Research output: Contribution to journal › Article › Scientific › peer-review

  Open Access

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• Interactive Intent Modeling for Exploratory Search

  Ruotsalo, T., Peltonen, J., Eugster, M. J. A., Glowacka, D., Floréen, P., Myllymäki, P., Jacucci, G. & Kaski, S., Oct 2018, In: ACM Transactions on Information Systems. 36, 4, p. 44:1-46 46 p.

  Research output: Contribution to journal › Article › Scientific › peer-review

  Open Access

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• Likelihood-free inference via classification

  Gutmann, M. U., Dutta, R., Kaski, S. & Corander, J., Mar 2018, In: Statistics and Computing. 28, 2, p. 411-425 15 p.

  Research output: Contribution to journal › Article › Scientific › peer-review

  Open Access

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• Method and apparatus for information retrieval

  Eugster, M., Ruotsalo, T., Sovijärvi-Spapé, M., Jacucci, G., Kaski, S., Ravaja, N. & Barral, O., 2018, Google Patents, Patent No. US20180082017A1

  Research output: Patent

• 2017

  A Community Challenge for Inferring Genetic Predictors of Gene Essentialities through Analysis of a Functional Screen of Cancer Cell Lines

  Gönen, M., Weir, B. A., Cowley, G. S., Vazquez, F., Guan, Y., Jaiswal, A., Karasuyama, M., Uzunangelov, V., Wang, T., Tsherniak, A., Howell, S., Marbach, D., Hoff, B., Norman, T. C., Airola, A., Bivol, A., Bunte, K., Carlin, D., Chopra, S. & Deran, A. & 26 others, Ellrott, K., Gopalacharyulu, P., Graim, K., Kaski, S., Khan, S. A., Newton, Y., Ng, S., Pahikkala, T., Paull, E., Sokolov, A., Tang, H., Tang, J., Wennerberg, K., Xie, Y., Zhan, X., Zhu, F., Aittokallio, T., Mamitsuka, H., Stuart, J. M., Boehm, J. S., Root, D. E., Xiao, G., Stolovitzky, G., Hahn, W. C., Margolin, A. A. & Broad-DREAM Community, 22 Nov 2017, In: Cell Systems. 5, 5, p. 485-+ 16 p.

  Research output: Contribution to journal › Article › Scientific › peer-review

• A transcriptomics data-driven gene space accurately predicts liver cytopathology and drug-induced liver injury

  Kohonen, P., Parkkinen, J. A., Willighagen, E. L., Ceder, R., Wennerberg, K., Kaski, S. & Grafstrom, R. C., 3 Jul 2017, In: Nature Communications. 8, 15 p., 15932.

  Research output: Contribution to journal › Article › Scientific › peer-review

  Open Access

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• BCI for physiological text annotation

  Barral, O., Kosunen, I., Ruotsalo, T., Spapé, M. M., Eugster, M. J. A., Ravaja, N., Kaski, S. & Jacucci, G., 13 Mar 2017, Proceedings of the 2017 ACM Workshop on An Application-oriented Approach to BCI out of the laboratory. New York, NY: ACM, p. 9-13 5 p.

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Scientific › peer-review

  Open Access

  File

• Differentially private Bayesian learning on distributed data

  Heikkila, M., Lagerspetz, E., Kaski, S., Shimizu, K., Tarkoma, S. & Honkela, A., 2017, Advances in Neural Information Processing Systems 30 (NIPS 2017). Guyon, I., Luxburg, U. V., Bengio, S., Wallach, H., Fergus, R., Vishwanathan, S. & Garnett, R. (eds.). NEURAL INFORMATION PROCESSING SYSTEMS (NIPS), Vol. 30. 10 p. (Advances in Neural Information Processing Systems; vol. 30).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Scientific › peer-review

  Open Access

  File

• Fundamentals and Recent Developments in Approximate Bayesian Computation

  Lintusaari, J., Gutmann, M. U., Dutta, R., Kaski, S. & Corander, J., Jan 2017, In: Systematic Biology. 66, 1, p. E66-E82 17 p.

  Research output: Contribution to journal › Article › Scientific › peer-review

  Open Access

  File

• Interactive Elicitation of Knowledge on Feature Relevance Improves Predictions in Small Data Sets

  Micallef, L., Sundin, I., Marttinen, P., Ammad-ud-din, M., Peltola, T., Soare, M., Jacucci, G. & Kaski, S., 2017, Proceedings of the 22nd International Conference on Intelligent User Interfaces (IUI '17). ACM

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Scientific › peer-review

  Open Access

  File

• Low-dimensional information discovery and presentation system, apparatus and method

  Ruotsalo, T. J., Peltonen, J. T., Eugster, M. J. A., Myllymäki, P. J., Jacucci, G., Kaski, S. & Glowacka, D., 1 Oct 2017, Google Patents, Patent No. US9798780B2

  Research output: Patent

• MediSyn: uncertainty-aware visualization of multiple biomedical datasets to support drug treatment selection

  He, C., Micallef, L., Tanoli, Z.-U.-R., Kaski, S., Aittokallio, T. & Jacucci, G., 2017, In: BMC Bioinformatics. 18, 12 p., 393.

  Research output: Contribution to journal › Article › Scientific › peer-review

  Open Access

  File
• 2016

  Crowdsourced assessment of common genetic contribution to predicting anti-TNF treatment response in rheumatoid arthritis

  Sieberts, S. K., Zhu, F., Garcia-Garcia, J., Stahl, E., Pratap, A., Pandey, G., Pappas, D., Aguilar, D., Anton, B., Bonet, J., Eksi, R., Fornes, O., Guney, E., Li, H., Marin, M. A., Panwar, B., Planas-Iglesias, J., Poglayen, D., Cui, J. & Falcao, A. O. & 31 others, Suver, C., Hoff, B., Balagurusamy, V. S. K., Dillenberger, D., Neto, E. C., Norman, T., Aittokallio, T., Ammad-ud-din, M., Azencott, C.-A., Bellon, V., Boeva, V., Bunte, K., Chheda, H., Cheng, L., Corander, J., Dumontier, M., Goldenberg, A., Gopalacharyulu, P., Hajiloo, M., Hidru, D., Jaiswal, A., Kaski, S., Khalfaoui, B., Khan, S. A., Kramer, E. R., Marttinen, P., Pirinen, M., Saarela, J., Tang, J., Wennerberg, K. & Rheumatoid Arth Challenge, Aug 2016, In: Nature Communications. 7, 9 p., 12460.

  Research output: Contribution to journal › Article › Scientific › peer-review

  Open Access

  File

• Drug response prediction by inferring pathway-response associations with kernelized Bayesian matrix factorization

  Ammad-ud-din, M., Khan, S. A., Malani, D., Murumägi, A., Kallioniemi, O., Aittokallio, T. & Kaski, S., 1 Sept 2016, In: Bioinformatics. 32, 17, p. 455-463 9 p.

  Research output: Contribution to journal › Article › Scientific › peer-review

  Open Access

• Extracting relevance and affect information from physiological text annotation

  Barral Mery de Bellegarde, O., Kosunen, I. J., Ruotsalo, T., Spape, M., Eugster, M., Ravaja, J. N., Kaski, S. J. I. & Jacucci, G., 2016, In: User Modeling and User-Adapted Interaction. 26, 5, p. 493-520 28 p.

  Research output: Contribution to journal › Article › Scientific › peer-review

• Interactive Intent Modeling from Multiple Feedback Domains

  Pyykkö, J., Kaski, S., Glowacka, D. & Daee, P., 7 Mar 2016, Proceedings of the 21st International Conference on Intelligent User Interfaces. New York, NY: ACM, Association for Computing Machinery, p. 71-75 5 p.

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Scientific › peer-review

• Natural brain-information interfaces: Recommending information by relevance inferred from human brain signals

  Eugster, M. J. A., Ruotsalo, T., Spape, M., Barral, O., Ravaja, N., Jacucci, G. & Kaski, S., 8 Dec 2016, In: Scientific Reports. 6, 10 p., 38580.

  Research output: Contribution to journal › Article › Scientific › peer-review

  Open Access

  File