Simon Puglisi

Associate professor, Department of Computer Science
Helsinki Institute for Information Technology
Algorithmic Bioinformatics
Bioinformatics
Supervisor for doctoral programme, Doctoral Programme in Computer Science

https://orcid.org/0000-0001-7668-7636

Phone+358294151462, +358503199256
Emailsimon.puglisi@helsinki.fi

PL 68 (Pietari Kalmin katu 5)
00014
Finland
Finland

Research activity per year

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Personal profile

Fields of Science

113 Computer and information sciences

International and National Collaboration

Publications and projects within past five years.

37 Conference contribution
22 Article
4 Chapter
2 Anthology or special issue
More
- 1 Editorial
- 1 Review Article

Block trees
Belazzougui, D., Caceres, M., Gagie, T., Gawrychowski, P., Kaerkkaeinen, J., Navarro, G., Ordonez, A., Puglisi, S. J. & Tabei, Y., May 2021, In : Journal of Computer and System Sciences. 117, p. 1-22 22 p.
Research output: Contribution to journal › Article › Scientific › peer-review
Data structures based on k-mers for querying large collections of sequencing data sets
Marchet, C., Boucher, C., Puglisi, S. J., Medvedev, P., Salson, M. & Chikhi, R., Jan 2021, In : Genome Research. 31, 1, 12 p.
Research output: Contribution to journal › Review Article › peer-review

Open Access
File
Tight Upper and Lower Bounds on Suffix Tree Breadth
Badkobeh, G., Gawrychowski, P., Kärkkäinen, J., Puglisi, S. & Zhukova, B., 16 Jan 2021, In : Theoretical Computer Science. 854, p. 63-67 5 p.
Research output: Contribution to journal › Article › Scientific › peer-review
Fast and accurate correction of optical mapping data via spaced seeds
Salmela, L., Mukherjee, K., Puglisi, S. J., Muggli, M. D. & Boucher, C., 1 Feb 2020, In : Bioinformatics. 36, 3, p. 682-689 8 p.
Research output: Contribution to journal › Article › Scientific › peer-review

Open Access
File
Fast Indexes for Gapped Pattern Matching
Cáceres, M., Puglisi, S. & Zhukova, B., 17 Jan 2020, SOFSEM 2020: Theory and Practice of Computer Science: 46th International Conference on Current Trends in Theory and Practice of Informatics, SOFSEM 2020, Limassol, Cyprus, January 20–24, 2020, Proceedings. Springer, p. 493-504 12 p.
Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Scientific › peer-review

13 Organisation and participation in conferences, workshops, courses, seminars
12 Academic visit at UH
9 Academic visit to other institution

University of Melbourne
Simon Puglisi (Visiting researcher)
25 Nov 2019 → 22 Dec 2019
Activity: Visiting an external institution types › Academic visit to other institution
Manuel Cáceres
Simon Puglisi (Host)
16 Sep 2018 → 9 Nov 2018
Activity: Hosting a visitor types › Academic visit at UH
Massimiliano Rossi
Simon Puglisi (Host)
28 Apr 2018 → 30 Sep 2018
Activity: Hosting a visitor types › Academic visit at UH
King's College London
Simon Puglisi (Visiting researcher)
23 Mar 2015 → 12 May 2015
Activity: Visiting an external institution types › Academic visit to other institution
Department of Informatics, Kyushu University
Simon Puglisi (Visiting researcher)
12 Sep 2015 → 28 Sep 2015
Activity: Visiting an external institution types › Academic visit to other institution