Deciphering cancer genomes with GenomeSpy: a grammar-based visualization toolkit

Lavikka, K., Oikkonen, J., Li, Y., Muranen, T., Micoli, G., Marchi, G., Lahtinen, A., Huhtinen, K., Lehtonen, R., Hietanen, S., Hynninen, J., Virtanen, A. & Hautaniemi, S., 5 Aug 2024, In: GigaScience. 13, 15 p., giae040.

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HRD related signature 3 predicts clinical outcome in advanced tubo-ovarian high-grade serous carcinoma

Koskela, H., Li, Y., Joutsiniemi, T., Muranen, T., Isoviita, V. M., Huhtinen, K., Micoli, G., Lavikka, K., Marchi, G., Hietanen, S., Virtanen, A., Hautaniemi, S., Oikkonen, J. & Hynninen, J., Jan 2024, In: Gynecologic Oncology. 180, p. 91-98 8 p.

Research output: Contribution to journal › Article › Scientific › peer-review

Association of the CHEK2 c.1100delC variant, radiotherapy, and systemic treatment with contralateral breast cancer risk and breast cancer-specific survival

Morra, A., Schreurs, M. A. C., Andrulis, I. L., Anton-Culver, H., Augustinsson, A., Beckmann, M. W., Behrens, S., Bojesen, S. E., Bolla, M. K., Brauch, H., Broeks, A., Buys, S. S., Camp, N. J., Castelao, J. E., Cessna, M. H., Chang-Claude, J., Chung, W. K., Colonna, S., Couch, F. J. & Cox, A. & 97 others, Cross, S. S., Czene, K., Daly, M. B., Dennis, J., Devilee, P., Doerk, T., Dunning, A. M., Dwek, M., Easton, D. F., Eccles, D. M., Eriksson, M., Evans, D. G., Fasching, P. A., Fehm, T. N., Figueroa, J. D., Flyger, H., Gabrielson, M., Gago-Dominguez, M., Garcia-Closas, M., Garcia-Saenz, J. A., Genkinger, J. A., Grassmann, F., Guendert, M., Hahnen, E., Haiman, C., Hamann, U., Harrington, P. A., Hartikainen, J. M., Hoppe, R., Hopper, J. L., Houlston, R. S., Howell, A., Jakubowska, A., Janni, W., Jernstroem, H., John, E. M., Johnson, N., Jones, M. E., Kristensen, V. N., Kurian, A., Lambrechts, D., Le Marchand, L., Lindblom, A., Lubinski, J., Lux, M. P., Mannermaa, A., Mavroudis, D., Mulligan, A. M., Muranen, T. A., Nevanlinna, H., Nevelsteen, I., Neven, P., Newman, W. G., Obi, N., Offit, K., Olshan, A. F., Park-Simon, T.-W., Patel, A., Peterlongo, P., Phillips, K.-A., Plaseska-Karanfilska, D., Polley, E. C., Presneau, N., Pylkas, K., Rack, B., Radice, P., Rashid, M. U., Rhenius, V., Robson, M., Romero, A., Saloustros, E., Sawyer, E. J., Schmutzler, R. K., Schuetze, S., Scott, C., Shah, M. T., Smichkoska, S., Southey, M. C., Tapper, W. J., Teras, L. R., Tollenaar, R. A. E. M., Tomczyk, K., Tomlinson, I., Troester, M., Vachon, C., van Veen, E., Wang, Q., Wendt, C., Wildiers, H., Winqvist, R. A., Ziogas, A., Hall, P., Pharoah, P. D. P., Adank, M., Hollestelle, A., Schmidt, M. K. & Hooning, M., Aug 2023, In: Cancer medicine . 12, 15, p. 16142-16162 21 p.

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Evolutionary states and trajectories characterized by distinct pathways stratify patients with ovarian high grade serous carcinoma

Lahtinen, A., Hautaniemi, S., Lavikka, K. A., Virtanen, A., Li, Y., Jamalzadeh, S., Skorda, A., Rossberg Lauridsen, A., Zhang, K., Marchi, G., Isoviita, V.-M., Ariotta, V., Lehtonen, J. O., Muranen, T. A., Huhtinen, K. L., Carpen, O. M., Hietanen, S., Senkowski, W., Kallunki, T. & Häkkinen, A. & 1 others, Hynninen, J., 12 Jun 2023, In: Cancer Cell. 41, 6, p. 1103-+ 28 p.

Research output: Contribution to journal › Article › Scientific › peer-review

Functional Homologous Recombination Assay on FFPE Specimens of Advanced High-Grade Serous Ovarian Cancer Predicts Clinical Outcomes

Pikkusaari, S., Tumiati, M., Virtanen, A., Oikkonen, J., Li, Y., Perez-Villatoro, F., Muranen, T., Salko, M., Huhtinen, K., Kanerva, A., Koskela, H., Tapper, J., Koivisto-Korander, R., Joutsiniemi, T., Haltia, U.-M., Lassus, H., Hautaniemi, S., Färkkilä, A., Hynninen, J. & Hietanen, S. & 2 others, Carpen, O. & Kauppi, L., 15 Aug 2023, In: Clinical Cancer Research. 29, 16, p. 3110-3123 14 p.

Research output: Contribution to journal › Article › Scientific › peer-review