Teemu Kivioja

Title of Docent, Department of Computer Science
Supervisor for doctoral programme, Doctoral Programme in Integrative Life Science

Emailteemu.kivioja@helsinki.fi

Viikinkaari 5, Biocenter 2
00790 Helsinki
Finland

Research activity per year

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Personal profile

Fields of Science

113 Computer and information sciences

International and National Collaboration

Publications and projects within past five years.

29 Article
1 Conference article

A comparative genomics multitool for scientific discovery and conservation
Zoonomia Consortium, Genereux, D. P., Serres, A., Armstrong, J., Kivioja, T., Taipale, J. & Karlsson, E. K., 12 Nov 2020, In : Nature. 587, 7833, p. 240-+ 16 p.
Research output: Contribution to journal › Article › Scientific › peer-review

Open Access
File
Binding specificities of human RNA-binding proteins toward structured and linear RNA sequences
Jolma, A., Zhang, J., Mondragon, E., Morgunova, E., Kivioja, T., Laverty, K. U., Yin, Y., Zhu, F., Bourenkov, G., Morris, Q., Hughes, T. R., Maher III, L. J. & Taipale, J., Jul 2020, In : Genome Research. 30, 7, p. 962-973 12 p.
Research output: Contribution to journal › Article › Scientific › peer-review

Open Access
File
A protein activity assay to measure global transcription factor activity reveals determinants of chromatin accessibility
Wei, B., Jolma, A., Sahu, B., Orre, L. M., Zhong, F., Zhu, F., Kivioja, T., Sur, I., Lehtiö, J., Taipale, M. & Taipale, J., Jun 2018, In : Nature Biotechnology. 36, 6, p. 521-+ 13 p.
Research output: Contribution to journal › Article › Scientific › peer-review
Contribution of allelic imbalance to colorectal cancer
Palin, K., Pitkänen, E., Turunen, M., Sahu, B., Pihlajamaa, P., Kivioja, T., Kaasinen, E., Välimäki, N., Hänninen, U. A., Cajuso, T., Aavikko, M., Tuupanen, S., Kilpivaara, O., van den Berg, L., Kondelin, J., Tanskanen, T., Katainen, R., Grau, M., Rauanheimo, H., Plaketti, R-M. & 20 others, Taira, A., Sulo, P., Hartonen, T., Dave, K., Schmierer, B., Botla, S., Sokolova, M., Vähärautio, A., Gladysz, K., Ongen, H., Dermitzakis, E., Bramsen, J. B., Orntoft, T. F., Andersen, C. L., Ristimäki, A., Lepistö, A., Renkonen-Sinisalo, L., Mecklin, J-P., Taipale, J. & Aaltonen, L. A., 10 Sep 2018, In : Nature Communications. 9, 9 p., 3664.
Research output: Contribution to journal › Article › Scientific › peer-review

Open Access
File
Modular discovery of monomeric and dimeric transcription factor binding motifs for large data sets
Toivonen, J., Kivioja, T., Jolma, A., Yin, Y., Taipale, J. & Ukkonen, E., 4 May 2018, In : Nucleic Acids Research. 46, 8, 16 p.
Research output: Contribution to journal › Article › Scientific › peer-review

Open Access
File

1 Peer review of manuscripts

IEEE/ACM Transactions on Computational Biology and Bioinformatics (Journal)
Teemu Kivioja (Reviewer)
2010 → …
Activity: Publication peer-review and editorial work types › Peer review of manuscripts

Fields of Science

A comparative genomics multitool for scientific discovery and conservation

Binding specificities of human RNA-binding proteins toward structured and linear RNA sequences

A protein activity assay to measure global transcription factor activity reveals determinants of chromatin accessibility

Contribution of allelic imbalance to colorectal cancer

Modular discovery of monomeric and dimeric transcription factor binding motifs for large data sets

IEEE/ACM Transactions on Computational Biology and Bioinformatics (Journal)