Research output per year
Research output per year
Personal profile
Curriculum vitae
Educations:
- (2016-2019) MSc in Life Science - Bioinformatics Major, Aalto University, Espoo, Finland
- thesis title: Application of variation of sparse non-linear CCA for feature selection in cancer cell lines sensitivity prediction
- (2013-2016) MSc in Computer Science, Åbo Akademi University, Turku, Finland
- thesis title: Quantitative refinement of EGFR signaling pathway
Work Experiences:
- (05.2020-04.2022) Research Assistant, Network pharmacology for personalized medicine, University
of Helsinki, Finland - (2017-2019) Research Assistant, Kernel Methods, Pattern Analysis, and Computational Metabolomics (KEPACO) research GROUP, Aalto University - Helsinki Institute for Information Technology, Espoo, Finland
- (2014-2016) Research Assistant, Computational Biomodeling Laboratory (Combio), Åbo Akademi University, Turku, Finland
- Teaching in courses such as Data Science, Machine Learning Basic Principles, Kernel Methods In Machine Learning, and Informatics Approaches for Life Science Omics.
Research Interests:
- Machine Learning and Data Science for medical and biological data
- Prognoses and Diagnoses with AI
- Multi-modals
- Precision Medicine
- Drug Sensitivity and Resistance
External positions
Department of computer science; Research assistant and master student., Aalto University
1 May 2017 → 15 May 2020
Fields of Science
- 113 Computer and information sciences
- Data Science
- Machine Learning
- Statistical modelling
- Computational systems biology
- Computational systems medicine
Collaborations and top research areas from the last five years
Recent external collaboration on country/territory level. Dive into details by clicking on the dots or
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Comparable recurrence risk for MRI-detected Gleason Grade Group (GG) 2 and systematic biopsy-detected GG1 prostate cancer
Batouche, A.-O., Czeizler, E., Lehto, T.-P., Erickson, A., Shadbahr, T., Laajala, T. D., Pohjonen, J., Mirtti, T. & Rannikko, A. S., Mar 2026, In: BJU International. 137, 3, p. 547-554 8 p.Research output: Contribution to journal › Article › Scientific › peer-review
Open AccessFile -
PI-RADS v2 and Adverse Prostate Cancer Outcomes: A Cross-cohort Replication Study Across Three Centers
Shadbahr, T., Pylväläinen, J., Eineluoto, J., Moro, A., Kerro, O., Kenttämies, A., Czeizler, E., Murtola, T. J., Kim-Ollila, H.-J., Puech, P., Olivier, J., Villers, A., Peltonen, J., Nykter, M., Tang, J., Mirtti, T., Laajala, T. D. & Rannikko, A. S., 8 May 2026, (Accepted/In press) In: European urology oncology. 10 p.Research output: Contribution to journal › Article › Scientific › peer-review
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Leveraging Adult Brain Tumour Ai Models to Predict Paediatric Neurooncology Survival
Shadbahr, T., Ruffle, J., Burrows, L., Palladino, I., Gains, J., Roberts, M. & Hyare, H., Sept 2025, In: Neuro-Oncology. 27, Supplement 2, p. ii15-ii15 1 p.Research output: Contribution to journal › Meeting Abstract › peer-review
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Targeting SARS-CoV-2 RNA-dependent RNA polymerase with the coumarin derivative BPR2-D2: Evidence from cell-based and enzymatic studies
Tang, W.-F., Tsai, H.-P., Chin, Y.-F., Tsai, S.-K., Lin, C.-C., Ngo, S. T., Liang, P.-H., Jheng, J.-R., Hsieh, C.-F., Lee, J.-C., Chang, Y.-H., Chang, T.-Y., Lin, C.-Y., Lin, G.-H., Cai, J.-Y., Chen, Y.-L., Chen, Y.-S., Liu, P.-C., Yang, C.-M. & Shadbahr, T. & 9 others, , Aug 2025, In: Biomedicine & Pharmacotherapy. 189, 17 p., 118252.Research output: Contribution to journal › Article › Scientific › peer-review
Open AccessFile -
BPR3P0128, a non-nucleoside RNA-dependent RNA polymerase inhibitor, inhibits SARS-CoV-2 variants of concern and exerts synergistic antiviral activity in combination with remdesivir
Tang, W.-F., Chang, Y.-H., Lin, C.-C., Jheng, J.-R., Hsieh, C.-F., Chin, Y.-F., Chang, T.-Y., Lee, J.-C., Liang, P.-H., Lin, C.-Y., Lin, G.-H., Cai, J.-Y., Chen, Y.-L., Chen, Y.-S., Tsai, S.-K., Liu, P.-C., Yang, C.-M., Shadbahr, T., Tang, J. & Hsu, Y.-L. & 8 others, , Apr 2024, In: Antimicrobial Agents and Chemotherapy. 68, 4, 26 p., e00956-23.Research output: Contribution to journal › Article › Scientific › peer-review
Open AccessFile
Projects
- 1 Finished
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Tuomas Mirtti Jusélius 1/3 2024-25
Mirtti, T. (Project manager), Batouche, O. (Participant), Jaakkola, O. A. A. (Participant), Laajala, D. (Participant), Lehto, T.-P. (Participant), Pirinen, I. E. (Participant) & Shadbahr, T. (Participant)
Sigrid Juséliuksen Säätiö @003701165704@
01/05/2024 → 30/04/2026
Project: Foundations (Private Foundations, Non-Profit Foundations, Charitable Trusts)