Research output per year
Research output per year
Personal profile
Description of research and teaching
Tommi is a computer scientist/statistician at the Department of Mathematics and Statistics. He develops algorithms and probabilistic models for analyzing DNA sequencing data from bacteria and does applied research on human pathogens on the WHO priority pathogen list.
Fields of Science
- 112 Statistics and probability
- 113 Computer and information sciences
- 11832 Microbiology and virology
International and National Collaboration
Publications and projects within past five years.
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Genomic and Phenotypic Characterization of Clostridium botulinum Isolates from an Infant Botulism Case Suggests Adaptation Signatures to the Gut
Douillard, F. P., Derman, Y., Woudstra, C., Selby, K., Mäklin, T., Dorner, M. B., Saxen, H., Dorner, B. G., Korkeala, H. & Lindström, M., 28 Jun 2022, In: mBio. 13, 3, 13 p.Research output: Contribution to journal › Article › Scientific › peer-review
Open AccessFile -
Strong pathogen competition in neonatal gut colonisation
Mäklin, T., Thorpe, H. A., Pöntinen, A. K., Gladstone, R. A., Shao, Y., Pesonen, M., McNally, A., Johnsen, P. J., Samuelsen, Ø., Lawley, T. D., Honkela, A. & Corander, J., 1 Dec 2022, In: Nature Communications. 13, 7417.Research output: Contribution to journal › Article › Scientific › peer-review
Open AccessFile -
A LONGITUDINAL GENOMIC AND FUNCTIONAL ANALYSIS OF CLOSTRIDIUM BOTULINUM ISOLATED FROM AN INFANT BOTULISM CASE
Douillard, F. P., Derman, Y., Woudstra, C., Selby, K., Mäklin, T., Honkela, A., Korkeala, H. & Lindstrom, M., Jan 2021, In: Toxicon. 190, p. S17-S17 1 p.Research output: Contribution to journal › Meeting Abstract › peer-review
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Bacterial Genomic Epidemiology with Mixed Samples
Mäklin, T., Kallonen, T., Alanko, J., Samuelsen, Ø., Hegstad, K., Mäkinen, V., Corander, J., Heinz, E. & Honkela, A., 15 Nov 2021, In: Microbial Genomics. 7, 11, 18 p., 000691.Research output: Contribution to journal › Article › Scientific › peer-review
Open AccessFile -
Closing Clostridium botulinum Group III Genomes Using Long-Read Sequencing
Woudstra, C., Mäklin, T., Derman, Y., Bano, L., Skarin, H., Mazuet, C., Honkela, A. & Lindström, M., Jun 2021, In: Microbiology Resource Announcements. 10, 22, 4 p., e01364-20.Research output: Contribution to journal › Article › Scientific › peer-review
Open AccessFile
Activities
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Microbiome (Journal)
Tommi Mäklin (Reviewer)
Jan 2023Activity: Publication peer-review and editorial work types › Peer review of manuscripts
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Lahti group meeting
Tommi Mäklin (Speaker)
17 Jan 2023Activity: Talk or presentation types › Oral presentation
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Young researcher workshop
Tommi Mäklin (Attendee)
14 Jun 2022 → 15 Jun 2022Activity: Participating in or organising an event types › Organisation and participation in conferences, workshops, courses, seminars
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AMR-BRIDGE annual meeting
Tommi Mäklin (Invited speaker)
13 Jun 2022 → 14 Jun 2022Activity: Talk or presentation types › Invited talk
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AMR and population genomics
Tommi Mäklin (Attendee)
12 Jun 2022 → 13 Jun 2022Activity: Participating in or organising an event types › Organisation and participation in conferences, workshops, courses, seminars