Research output per year
Research output per year
Personal profile
External positions
Honorary Research Fellow, Liggins Institute
1 Jun 2022 → …
Fields of Science
- 11832 Microbiology and virology
- Human Microbiome
- 1181 Ecology, evolutionary biology
- Microbial Ecology
- 113 Computer and information sciences
- Bioinformatics
International and National Collaboration
Publications and projects within past five years.
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Mobile genetic elements from the maternal microbiome shape infant gut microbial assembly and metabolism
Vatanen, T., Jabbar, K. S., Ruohtula, T., Honkanen, J., Avila-Pacheco, J., Siljander, H., Stražar, M., Oikarinen, S., Hyöty, H., Ilonen, J., Mitchell, C. M., Yassour, M., Virtanen, S. M., Clish, C. B., Plichta, D. R., Vlamakis, H., Knip, M. & Xavier, R. J., 22 Dec 2022, In: Cell. 185, 26, p. 4921-4936.e15 32 p.Research output: Contribution to journal › Article › Scientific › peer-review
Open AccessFile -
A distinct clade of Bifidobacterium longum in the gut of Bangladeshi children thrives during weaning
Vatanen, T., Ang, Q. Y., Siegwald, L., Sarker, S. A., Le Roy, C. I., Duboux, S., Delannoy-Bruno, O., Ngom-Bru, C., Boulangé, C. L., Stražar, M., Avila-Pacheco, J., Deik, A., Pierce, K., Bullock, K., Dennis, C., Sultana, S., Sayed, S., Rahman, M., Ahmed, T., Modesto, M., & 6 others, 10 Nov 2022, In: Cell. 185, 23, p. 4280-4297.e12 30 p.Research output: Contribution to journal › Article › Scientific › peer-review
Open AccessFile -
Variation in Microbiome LPS Immunogenicity Contributes to Autoimmunity in Humans
Vatanen, T., Kostic, A. D., d'Hennezel, E., Siljander, H., Franzosa, E. A., Yassour, M., Kolde, R., Vlamakis, H., Arthur, T. D., Hämäläinen, A-M., Peet, A., Tillmann, V., Uibo, R., Mokurov, S., Dorshakova, N., Ilonen, J., Virtanen, S. M., Szabo, S. J., Porter, J. A., Lahdesmaki, H., & 6 others, 5 May 2016, In: Cell. 165, 4, p. 842-853 12 p.Research output: Contribution to journal › Article › Scientific › peer-review
Open Access -
Genomic variation and strain-specific functional adaptation in the human gut microbiome during early life
Vatanen, T., Plichta, D. R., Somani, J., Muench, P. C., Arthur, T. D., Hall, A. B., Rudolf, S., Oakeley, E. J., Ke, X., Young, R. A., Haiser, H. J., Kolde, R., Yassour, M., Luopajärvi, K., Siljander, H., Virtanen, S. M., Ilonen, J., Uibo, R., Tillmann, V., Mokurov, S., & 8 others, Mar 2019, In: Nature Microbiology. 4, 3, p. 470-479 10 p.Research output: Contribution to journal › Article › Scientific › peer-review
Open AccessFile -
The human gut microbiome in early-onset type 1 diabetes from the TEDDY study
Vatanen, T., Franzosa, E. A., Schwager, R., Tripathi, S., Arthur, T. D., Vehik, K., Lernmark, Å., Hagopian, W. A., Rewers, M. J. & She, J-X., 2018, In: Nature. 562, 7728, p. 589-594 6 p.Research output: Contribution to journal › Article › Scientific › peer-review
Open AccessFile
Projects
- 4 Active
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The role of bacteriophages in the infant gut microbiome assembly
Vatanen, T. M. & Björkgren, L. N.
Academy of Finland, Suomen Akatemia Projektilaskutus
01/09/2022 → 31/08/2027
Project: Research Council of Finland: Academy Research Fellow
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Juselius 2023-2026
Vatanen, T. M., Ahmad, F. & Uddin, M. K.
01/05/2023 → 30/04/2025
Project: Foundations (Private Foundations, Non-Profit Foundations, Charitable Trusts)
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The role of bacteriophages in the infant gut microbiome assembly
Vatanen, T. M., Ahmad, F., Björkgren, L. N., Kreuze, K. J. F. & Satova, E.
Academy of Finland, Suomen Akatemia Projektilaskutus
01/09/2022 → 31/12/2025
Project: Research Council of Finland: Academy Research Fellow's research expenses
Prizes
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Web of Science Highly Cited Researcher 2021
Vatanen, Tommi Matias (Recipient), 2021
Prize: Prizes and awards
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University of Auckland Early Career Research Excellence Award
Vatanen, Tommi Matias (Recipient), 2021
Prize: Prizes and awards
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Web of Science Highly Cited Researcher 2020
Vatanen, Tommi Matias (Recipient), 2020
Prize: Prizes and awards
Press/Media
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Mobile Genes From the Mother Shape the Baby’s Microbiome
17/01/2023
1 Media contribution
Press/Media: Press / Media
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How a mother’s microbiome helps shape her baby’s development
22/12/2022
1 Media contribution
Press/Media: Press / Media
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What We Can Learn from Babies’ Gut Microbiomes
23/11/2021
1 item of Media coverage
Press/Media: Press / Media
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Can a probiotic prevent type 1 diabetes in children?
09/06/2021
1 item of Media coverage
Press/Media: Press / Media
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Suomalaistutkimus: Vauvojen suolistosta löytyi yhteys lapsuuden diabeteksen puhkeamiseen
25/03/2017
1 item of Media coverage
Press/Media: Press / Media