Research output per year
Research output per year
Personal profile
External positions
Honorary Research Fellow, Liggins Institute
1 Jun 2022 → …
Fields of Science
- 11832 Microbiology and virology
- Human Microbiome
- 1181 Ecology, evolutionary biology
- Microbial Ecology
- 113 Computer and information sciences
- Bioinformatics
Collaborations and top research areas from the last five years
Recent external collaboration on country/territory level. Dive into details by clicking on the dots or
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Mobile genetic elements from the maternal microbiome shape infant gut microbial assembly and metabolism
Vatanen, T., Jabbar, K. S., Ruohtula, T., Honkanen, J., Avila-Pacheco, J., Siljander, H., Stražar, M., Oikarinen, S., Hyöty, H., Ilonen, J., Mitchell, C. M., Yassour, M., Virtanen, S. M., Clish, C. B., Plichta, D. R., Vlamakis, H., Knip, M. & Xavier, R. J., 22 Dec 2022, In: Cell. 185, 26, p. 4921-4936.e15 32 p.Research output: Contribution to journal › Article › Scientific › peer-review
Open AccessFile -
A distinct clade of Bifidobacterium longum in the gut of Bangladeshi children thrives during weaning
Vatanen, T., Ang, Q. Y., Siegwald, L., Sarker, S. A., Le Roy, C. I., Duboux, S., Delannoy-Bruno, O., Ngom-Bru, C., Boulangé, C. L., Stražar, M., Avila-Pacheco, J., Deik, A., Pierce, K., Bullock, K., Dennis, C., Sultana, S., Sayed, S., Rahman, M., Ahmed, T. & Modesto, M. & 6 others, , 10 Nov 2022, In: Cell. 185, 23, p. 4280-4297.e12 30 p.Research output: Contribution to journal › Article › Scientific › peer-review
Open AccessFile -
Variation in Microbiome LPS Immunogenicity Contributes to Autoimmunity in Humans
Vatanen, T., Kostic, A. D., d'Hennezel, E., Siljander, H., Franzosa, E. A., Yassour, M., Kolde, R., Vlamakis, H., Arthur, T. D., Hämäläinen, A.-M., Peet, A., Tillmann, V., Uibo, R., Mokurov, S., Dorshakova, N., Ilonen, J., Virtanen, S. M., Szabo, S. J., Porter, J. A. & Lahdesmaki, H. & 6 others, , 5 May 2016, In: Cell. 165, 4, p. 842-853 12 p.Research output: Contribution to journal › Article › Scientific › peer-review
Open Access -
Genomic variation and strain-specific functional adaptation in the human gut microbiome during early life
Vatanen, T., Plichta, D. R., Somani, J., Muench, P. C., Arthur, T. D., Hall, A. B., Rudolf, S., Oakeley, E. J., Ke, X., Young, R. A., Haiser, H. J., Kolde, R., Yassour, M., Luopajärvi, K., Siljander, H., Virtanen, S. M., Ilonen, J., Uibo, R., Tillmann, V. & Mokurov, S. & 8 others, , Mar 2019, In: Nature Microbiology. 4, 3, p. 470-479 10 p.Research output: Contribution to journal › Article › Scientific › peer-review
Open AccessFile -
The human gut microbiome in early-onset type 1 diabetes from the TEDDY study
Vatanen, T., Franzosa, E. A., Schwager, R., Tripathi, S., Arthur, T. D., Vehik, K., Lernmark, Å., Hagopian, W. A., Rewers, M. J. & She, J.-X., 2018, In: Nature. 562, 7728, p. 589-594 6 p.Research output: Contribution to journal › Article › Scientific › peer-review
Open AccessFile
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The role of bacteriophages in the infant gut microbiome assembly
Vatanen, T. M. (Project manager), Ahmad, F. (Participant), Björkgren, L. N. (Participant), Ji, S. (Participant) & Naghib Zadeh, S. K. (Participant)
Academy of Finland, Suomen Akatemia Projektilaskutus
01/09/2022 → 30/04/2023
Project: Research Council of Finland: Academy Research Fellow
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The role of bacteriophages in the infant gut microbiome assembly
Vatanen, T. M. (Project manager) & Ji, S. (Participant)
Suomen Akatemia Projektilaskutus
01/05/2025 → 31/08/2027
Project: Research Council of Finland: Academy Research Fellow's research expenses
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JDRF Australia / Vatanen Tommi
Vatanen, T. M. (Project manager) & Ahmad, F. (Participant)
01/12/2023 → 30/06/2026
Project: Other funder
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Juselius 2023-2026
Vatanen, T. M. (Project manager), Ahmad, F. (Participant), Lahtela, M. E. J. (Participant) & Uddin, M. K. (Participant)
Sigrid Juséliuksen Säätiö @003701165704@
01/05/2023 → 30/04/2026
Project: Foundations (Private Foundations, Non-Profit Foundations, Charitable Trusts)
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The role of bacteriophages in the infant gut microbiome assembly
Vatanen, T. M. (Project manager), Ahmad, F. (Participant), Björkgren, L. N. (Participant), Ji, S. (Participant), Kreuze, K. J. F. (Participant), Lahtela, M. E. J. (Participant) & Lalli, M. K. (Participant)
Academy of Finland, Suomen Akatemia Projektilaskutus
01/09/2022 → 30/04/2023
Project: Research Council of Finland: Academy Research Fellow's research expenses
Prizes
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University of Auckland Early Career Research Excellence Award
Vatanen, T. M. (Recipient), 2021
Prize: Prizes and awards
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Press/Media
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Mobile Genes From the Mother Shape the Baby’s Microbiome
17/01/2023
1 Media contribution
Press/Media: Press / Media
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How a mother’s microbiome helps shape her baby’s development
22/12/2022
1 Media contribution
Press/Media: Press / Media
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What We Can Learn from Babies’ Gut Microbiomes
23/11/2021
1 item of Media coverage
Press/Media: Press / Media
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Can a probiotic prevent type 1 diabetes in children?
09/06/2021
1 item of Media coverage
Press/Media: Press / Media
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Suomalaistutkimus: Vauvojen suolistosta löytyi yhteys lapsuuden diabeteksen puhkeamiseen
25/03/2017
1 item of Media coverage
Press/Media: Press / Media