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Personal profile

Keywords

  • 113 Computer and information sciences

International and National Collaboration Publications and projects within past five years.

Publications 2000 2019

Genome-Scale Algorithm Design: Biological Sequence Analysis in the Era of High-Throughput Sequencing

Mäkinen, V. A. T., Belazzougui, D., Cunial, F. & Tomescu, A. I., May 2015, Cambrigde University Press. 391 p.

Research output: Book/ReportBookScientificpeer-review

Compressed representations of sequences and full-text indexes

Ferragina, P., Manzini, G., Mäkinen, V. & Navarro, G., 2007, In : ACM Transactions on Algorithms. 3, 2, p. Art. 20

Research output: Contribution to journalArticleScientificpeer-review

Dynamic entropy-compressed sequences and full-text indexes

Mäkinen, V. & Navarro, G., 2008, In : ACM Transactions on Algorithms. 4, 3, p. art. 32 38 p.

Research output: Contribution to journalArticleScientificpeer-review

Compressed full-text indexes

Navarro, G. & Mäkinen, V., 2007, In : ACM Computing Surveys. 39, 1, p. Article No. 2

Research output: Contribution to journalArticleScientificpeer-review

Indexing Graphs for Path Queries with Applications in Genome Research

Sirén, J., Välimäki, N. & Mäkinen, V., 2014, In : IEEE/ACM Transactions on Computational Biology and Bioinformatics. 11, 2, p. 375-388 14 p.

Research output: Contribution to journalArticleScientificpeer-review

Projects 2007 2021

Syöpägenetiikan tutkimuksen huippuyksikkö / Mäkinen

Mäkinen, V.

01/01/201531/12/2017

Project: Research project

Syöpägenetiikan tutkimuksen huippuyksikkö

Mäkinen, V.

01/01/201231/12/2017

Project: Research project

Itseindeksit massamuistissa

Mäkinen, V.

01/01/201030/09/2012

Project: Research project

Prizes

Hyvä tutkija -palkinto 2007

Veli Mäkinen (Recipient), 19 Dec 2007

Prize: Prizes and awards

Activities 2004 2019

BMC Bioinformatics (Journal)

Veli Mäkinen (Editor)
20132016

Activity: Publication peer-review and editorial work typesEditor of research journal

IWOCA 2016

Veli Mäkinen (Scientific Committee Chair)
2016

Activity: Participating in or organising an event typesOrganisation and participation in conferences, workshops, courses, seminars

HITSEQ at ISMB/ECCB 2017

Veli Mäkinen (Speaker: Keynote)
25 Jul 2017

Activity: Participating in or organising an event typesOrganisation and participation in conferences, workshops, courses, seminars

ECCB workshop on Computational Pan-Genomics

Veli Mäkinen (Speaker: Keynote)
4 Sep 2016

Activity: Participating in or organising an event typesOrganisation and participation in conferences, workshops, courses, seminars

German Conference on Bioinformatics 2015

Veli Mäkinen (Speaker: Keynote)
Sep 2015

Activity: Participating in or organising an event typesOrganisation and participation in conferences, workshops, courses, seminars

Press / Media

Repeat- and Error-Aware Comparison of Deletions

Veli Mäkinen

15/05/2015

1 item of media coverage

Press/Media: Press / Media