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2015

Compressed Suffix Array

Belazzougui, D., Mäkinen, V. A. T. & Valenzuela, S. D. A., 2015, Encyclopedia of Algorithms. Kao, M-Y. (ed.). New York: Springer, 6 p.

Research output: Chapter in Book/Report/Conference proceedingChapterScientificpeer-review

2010

Pattern Kits

Gagie, T., Karhu, K., Kärkkäinen, J., Mäkinen, V. & Salmela, L., 2010, (Submitted) arXiv. arXiv:1011.3491v2

Research output: Chapter in Book/Report/Conference proceedingChapterScientific

File

Unified view of backward backtracking in short read mapping

Mäkinen, V., Välimäki, N., Laaksonen, A. & Katainen, R., 2010, Algorithms and applications: Essays dedicated to Esko Ukkonen on the occasion of his 60th birthday. Elomaa, T., Mannila, H. & Orponen, P. (eds.). Springer-Verlag, 14 p. (Lecture Notes in Computer Science; vol. 2010, no. 6060).

Research output: Chapter in Book/Report/Conference proceedingChapterScientificpeer-review

2008

Compressed suffix array

Mäkinen, V., 2008, Encyclopedia of Algorithms. Boston, MA: Springer-Verlag, p. 174-176 3 p.

Research output: Chapter in Book/Report/Conference proceedingChapterScientificpeer-review

Compressed text indexing

Mäkinen, V. & Navarro, G., 2008, Encyclopedia of Algorithms. Boston, MA: Springer-Verlag, p. 176-178 3 p.

Research output: Chapter in Book/Report/Conference proceedingChapterScientificpeer-review

Point pattern matching

Mäkinen, V. & Ukkonen, E., 2008, Encyclopedia of Algorithms. Boston, MA: Springer-Verlag, p. 657-660 4 p.

Research output: Chapter in Book/Report/Conference proceedingChapterScientificpeer-review

2003

Sweepline the Music!

Ukkonen, E., Lemström, K. & Mäkinen, V., 2003, Computer Science in Perspective, Essays Dedicated to Thomas Ottmann. Springer-Verlag, p. 330-342 13 p. (LNCS; vol. 2598).

Research output: Chapter in Book/Report/Conference proceedingChapterScientific