Projects per year
Project Details
Description (abstract)
Sequencing the nuclear and mitochondrial genome of the wild type heterokaryon Finnish isolate 79 of the wood-decaying white rot Basidiomycota genus type species Phlebia radiata. Analysis of the wood-decaying proteome and secretome.
Key findings
Mitochondrial genome is the second largest among fungi with exceptional features. High-quality genome assembly of the wild type heterokaryon isolate.
| Short title | Prad genome |
|---|---|
| Status | Finished |
| Effective start/end date | 03/01/2011 → 31/12/2017 |
Fields of Science
- 1183 Plant biology, microbiology, virology
- fungal genomics
- Basidiomycota
- fungal biotechnology, fungal enzymes, lignocellulose, biodegradation
- 1181 Ecology, evolutionary biology
- fungal systematics
- fungal ecology
- fungal evolution
- 1182 Biochemistry, cell and molecular biology
- wood decay, basidiomycetes, fungi, metalloenzymes, secretion, laccases, peroxidases
- oxidoreductases
- carbohydrate active enzymes
- 1184 Genetics, developmental biology, physiology
- Genomics
- Proteomics
- Metabolomics
Equipment
-
BI Proteomic Unit (LS-RIA/ PPN Helsinki)
Institute of BiotechnologyFacility/equipment: Core Facility
-
DNA Genomics and Sequencing (LS-RIA/ HGI)
Institute of BiotechnologyFacility/equipment: Core Facility
Projects
- 2 Finished
-
Fungcolife: Fungal interactions and life-styles on wood
Lundell, T. (Project manager), Mali, T. (Participant), Mattila, H. (Participant), Shah, F. (Participant) & Mäkinen, M. (Participant)
01/09/2015 → 31/12/2019
Project: Research project
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Ox-Red: Functions and quenching of fungal oxidoreductases in a wood white-rot decay fungus
Lundell, T. (Project manager), Oksanen, I. (Participant), Kuuskeri, J. (Participant), Mäkelä, M. (Participant), Hilden, K. (Participant), Mäkinen, M. (Participant) & Paulin, L. (Participant)
01/01/2011 → 30/06/2015
Project: Research project
-
Hypoxia is regulating enzymatic wood decomposition and intracellular carbohydrate metabolism in filamentous white rot fungus
Mattila, H., Mäkinen, M. & Lundell, T., 24 Feb 2020, In: Biotechnology for Biofuels. 13, 1, 17 p., 26.Research output: Contribution to journal › Article › Scientific › peer-review
Open AccessFile -
Time-scale dynamics of proteome and transcriptome of the white-rot fungus Phlebia radiata: growth on spruce wood and decay effect on lignocellulose
Kuuskeri, J., Häkkinen, M., Laine, P., Smolander, O.-P., Tamene, F., Miettinen, S., Nousiainen, P., Kemell, M., Auvinen, P. & Lundell, T., 5 Sept 2016, In: Biotechnology for Biofuels. 9, 22 p., 192.Research output: Contribution to journal › Article › Scientific › peer-review
Open AccessFile -
Lignocellulose-converting enzyme activity profiles correlate with molecular systematics and phylogeny grouping in the incoherent genus Phlebia (Polyporales, Basidiomycota)
Kuuskeri, J. T., Mäkelä, M. R., Isotalo, J. M., Oksanen, I. M. & Lundell, T. K., 19 Oct 2015, In: BMC Microbiology. 15, 18 p., 217.Research output: Contribution to journal › Article › Scientific › peer-review
Open AccessFile