Genome, transcriptome and proteome of the wood-decay fungus Phlebia radiata

Project Details

Description

Sequencing the nuclear and mitochondrial genome of the wild type heterokaryon Finnish isolate 79 of the wood-decaying white rot Basidiomycota genus type species Phlebia radiata. Analysis of the wood-decaying proteome and secretome.

Key findings (do not fill)

Mitochondrial genome is the second largest among fungi with exceptional features. High-quality genome assembly of the wild type heterokaryon isolate.
Short titlePrad genome
StatusFinished
Effective start/end date03/01/201131/12/2017

Fields of Science

  • 1183 Plant biology, microbiology, virology
  • fungal genomics
  • Basidiomycota
  • fungal biotechnology, fungal enzymes, lignocellulose, biodegradation
  • 1181 Ecology, evolutionary biology
  • fungal systematics
  • fungal ecology
  • fungal evolution
  • 1182 Biochemistry, cell and molecular biology
  • wood decay, basidiomycetes, fungi, metalloenzymes, secretion, laccases, peroxidases
  • oxidoreductases
  • carbohydrate active enzymes
  • 1184 Genetics, developmental biology, physiology
  • Genomics
  • Proteomics
  • Metabolomics

Projects

Fungcolife: Fungal interactions and life-styles on wood

Lundell, T., Mali, T., Mattila, H., Shah, F. & Mäkinen, M.

01/09/201531/12/2019

Project: Research project

Research Output

Hypoxia is regulating enzymatic wood decomposition and intracellular carbohydrate metabolism in filamentous white rot fungus

Mattila, H., Mäkinen, M. & Lundell, T., 24 Feb 2020, In : Biotechnology for Biofuels. 13, 1, 17 p., 26.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
File

Time-scale dynamics of proteome and transcriptome of the white-rot fungus Phlebia radiata: growth on spruce wood and decay effect on lignocellulose

Kuuskeri, J., Häkkinen, M., Laine, P., Smolander, O-P., Tamene, F., Miettinen, S., Nousiainen, P., Kemell, M., Auvinen, P. & Lundell, T., 5 Sep 2016, In : Biotechnology for Biofuels. 9, 22 p., 192.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
File

Lignocellulose-converting enzyme activity profiles correlate with molecular systematics and phylogeny grouping in the incoherent genus Phlebia (Polyporales, Basidiomycota)

Kuuskeri, J. T., Mäkelä, M. R., Isotalo, J. M., Oksanen, I. M. & Lundell, T. K., 19 Oct 2015, In : BMC Microbiology. 15, 18 p., 217.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
File