A framework for space-efficient read clustering in metagenomic samples

Jarno Alanko, Fabio Cunial, Djamal Belazzougui, Veli Mäkinen

Research output: Contribution to journalArticleScientificpeer-review

Original languageEnglish
Article number59
JournalBMC Bioinformatics
Volume18
Issue numberSuppl 3
Number of pages12
ISSN1471-2105
DOIs
Publication statusPublished - 14 Mar 2017
MoE publication typeA1 Journal article-refereed

Fields of Science

  • Metagenomics
  • Read clustering
  • Text indexing
  • Burrows-Wheeler transform
  • Suffix-link tree
  • Right-maximal k-mer
  • Submaximal repeat
  • BINNING ALGORITHM
  • SEQUENCES
  • 1182 Biochemistry, cell and molecular biology

Cite this

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title = "A framework for space-efficient read clustering in metagenomic samples",
keywords = "Metagenomics, Read clustering, Text indexing, Burrows-Wheeler transform, Suffix-link tree, Right-maximal k-mer, Submaximal repeat, BINNING ALGORITHM, SEQUENCES, 1182 Biochemistry, cell and molecular biology",
author = "Jarno Alanko and Fabio Cunial and Djamal Belazzougui and Veli M{\"a}kinen",
year = "2017",
month = "3",
day = "14",
doi = "10.1186/s12859-017-1466-6",
language = "English",
volume = "18",
journal = "BMC Bioinformatics",
issn = "1471-2105",
publisher = "BMC",
number = "Suppl 3",

}

A framework for space-efficient read clustering in metagenomic samples. / Alanko, Jarno; Cunial, Fabio; Belazzougui, Djamal; Mäkinen, Veli.

In: BMC Bioinformatics, Vol. 18, No. Suppl 3, 59, 14.03.2017.

Research output: Contribution to journalArticleScientificpeer-review

TY - JOUR

T1 - A framework for space-efficient read clustering in metagenomic samples

AU - Alanko, Jarno

AU - Cunial, Fabio

AU - Belazzougui, Djamal

AU - Mäkinen, Veli

PY - 2017/3/14

Y1 - 2017/3/14

KW - Metagenomics

KW - Read clustering

KW - Text indexing

KW - Burrows-Wheeler transform

KW - Suffix-link tree

KW - Right-maximal k-mer

KW - Submaximal repeat

KW - BINNING ALGORITHM

KW - SEQUENCES

KW - 1182 Biochemistry, cell and molecular biology

U2 - 10.1186/s12859-017-1466-6

DO - 10.1186/s12859-017-1466-6

M3 - Article

VL - 18

JO - BMC Bioinformatics

JF - BMC Bioinformatics

SN - 1471-2105

IS - Suppl 3

M1 - 59

ER -