ARK

Aggregation of Reads by K-Means for Estimation of Bacterial Community Composition

David Koslicki, Saikat Chatterjee, Damon Shahrivar, Alan W. Walker, Suzanna C. Francis, Louise J. Fraser, Mikko Vehkaperae, Yueheng Lan, Jukka Corander

Research output: Contribution to journalArticleScientificpeer-review

Original languageEnglish
Article number0140644
JournalPLoS One
Volume10
Issue number10
Number of pages16
ISSN1932-6203
DOIs
Publication statusPublished - 23 Oct 2015
MoE publication typeA1 Journal article-refereed

Fields of Science

  • SPLIT VECTOR QUANTIZATION
  • LSF PARAMETERS
  • SEQUENCES
  • MEGAN
  • 112 Statistics and probability

Cite this

Koslicki, D., Chatterjee, S., Shahrivar, D., Walker, A. W., Francis, S. C., Fraser, L. J., ... Corander, J. (2015). ARK: Aggregation of Reads by K-Means for Estimation of Bacterial Community Composition. PLoS One, 10(10), [0140644]. https://doi.org/10.1371/journal.pone.0140644
Koslicki, David ; Chatterjee, Saikat ; Shahrivar, Damon ; Walker, Alan W. ; Francis, Suzanna C. ; Fraser, Louise J. ; Vehkaperae, Mikko ; Lan, Yueheng ; Corander, Jukka. / ARK : Aggregation of Reads by K-Means for Estimation of Bacterial Community Composition. In: PLoS One. 2015 ; Vol. 10, No. 10.
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keywords = "SPLIT VECTOR QUANTIZATION, LSF PARAMETERS, SEQUENCES, MEGAN, 112 Statistics and probability",
author = "David Koslicki and Saikat Chatterjee and Damon Shahrivar and Walker, {Alan W.} and Francis, {Suzanna C.} and Fraser, {Louise J.} and Mikko Vehkaperae and Yueheng Lan and Jukka Corander",
year = "2015",
month = "10",
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doi = "10.1371/journal.pone.0140644",
language = "English",
volume = "10",
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issn = "1932-6203",
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Koslicki, D, Chatterjee, S, Shahrivar, D, Walker, AW, Francis, SC, Fraser, LJ, Vehkaperae, M, Lan, Y & Corander, J 2015, 'ARK: Aggregation of Reads by K-Means for Estimation of Bacterial Community Composition', PLoS One, vol. 10, no. 10, 0140644. https://doi.org/10.1371/journal.pone.0140644

ARK : Aggregation of Reads by K-Means for Estimation of Bacterial Community Composition. / Koslicki, David; Chatterjee, Saikat; Shahrivar, Damon; Walker, Alan W.; Francis, Suzanna C.; Fraser, Louise J.; Vehkaperae, Mikko; Lan, Yueheng; Corander, Jukka.

In: PLoS One, Vol. 10, No. 10, 0140644, 23.10.2015.

Research output: Contribution to journalArticleScientificpeer-review

TY - JOUR

T1 - ARK

T2 - Aggregation of Reads by K-Means for Estimation of Bacterial Community Composition

AU - Koslicki, David

AU - Chatterjee, Saikat

AU - Shahrivar, Damon

AU - Walker, Alan W.

AU - Francis, Suzanna C.

AU - Fraser, Louise J.

AU - Vehkaperae, Mikko

AU - Lan, Yueheng

AU - Corander, Jukka

PY - 2015/10/23

Y1 - 2015/10/23

KW - SPLIT VECTOR QUANTIZATION

KW - LSF PARAMETERS

KW - SEQUENCES

KW - MEGAN

KW - 112 Statistics and probability

U2 - 10.1371/journal.pone.0140644

DO - 10.1371/journal.pone.0140644

M3 - Article

VL - 10

JO - PLoS One

JF - PLoS One

SN - 1932-6203

IS - 10

M1 - 0140644

ER -

Koslicki D, Chatterjee S, Shahrivar D, Walker AW, Francis SC, Fraser LJ et al. ARK: Aggregation of Reads by K-Means for Estimation of Bacterial Community Composition. PLoS One. 2015 Oct 23;10(10). 0140644. https://doi.org/10.1371/journal.pone.0140644