Bayesian clustering of DNA sequences using Markov chains and a stochastic partition model

Väinö Jääskinen, Ville Parkkinen, Lu Cheng, Jukka Corander

Research output: Contribution to journalArticleScientificpeer-review

Original languageEnglish
JournalStatistical applications in genetics and molecular biology
Volume13
Issue number1
Pages (from-to)105-121
Number of pages17
ISSN2194-6302
DOIs
Publication statusPublished - Feb 2014
MoE publication typeA1 Journal article-refereed

Fields of Science

  • Clustering
  • DNA sequences
  • Markov chains
  • metagenomics
  • DIRICHLET PROCESS MIXTURE
  • FACTOR-BINDING SITES
  • 16S RIBOSOMAL-RNA
  • IDENTIFICATION
  • DISCOVERY
  • DYNAMICS
  • 1182 Biochemistry, cell and molecular biology

Cite this

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title = "Bayesian clustering of DNA sequences using Markov chains and a stochastic partition model",
keywords = "Clustering, DNA sequences, Markov chains, metagenomics, DIRICHLET PROCESS MIXTURE, FACTOR-BINDING SITES, 16S RIBOSOMAL-RNA, IDENTIFICATION, DISCOVERY, DYNAMICS, 1182 Biochemistry, cell and molecular biology",
author = "V{\"a}in{\"o} J{\"a}{\"a}skinen and Ville Parkkinen and Lu Cheng and Jukka Corander",
year = "2014",
month = "2",
doi = "10.1515/sagmb-2013-0031",
language = "English",
volume = "13",
pages = "105--121",
journal = "Statistical applications in genetics and molecular biology",
issn = "1544-6115",
publisher = "Berkeley electronic press",
number = "1",

}

Bayesian clustering of DNA sequences using Markov chains and a stochastic partition model. / Jääskinen, Väinö; Parkkinen, Ville; Cheng, Lu; Corander, Jukka.

In: Statistical applications in genetics and molecular biology, Vol. 13, No. 1, 02.2014, p. 105-121.

Research output: Contribution to journalArticleScientificpeer-review

TY - JOUR

T1 - Bayesian clustering of DNA sequences using Markov chains and a stochastic partition model

AU - Jääskinen, Väinö

AU - Parkkinen, Ville

AU - Cheng, Lu

AU - Corander, Jukka

PY - 2014/2

Y1 - 2014/2

KW - Clustering

KW - DNA sequences

KW - Markov chains

KW - metagenomics

KW - DIRICHLET PROCESS MIXTURE

KW - FACTOR-BINDING SITES

KW - 16S RIBOSOMAL-RNA

KW - IDENTIFICATION

KW - DISCOVERY

KW - DYNAMICS

KW - 1182 Biochemistry, cell and molecular biology

U2 - 10.1515/sagmb-2013-0031

DO - 10.1515/sagmb-2013-0031

M3 - Article

VL - 13

SP - 105

EP - 121

JO - Statistical applications in genetics and molecular biology

JF - Statistical applications in genetics and molecular biology

SN - 1544-6115

IS - 1

ER -