Clustering cONtigs with COverage and ComposiTion (CONCOCT)

J Alneberg, BS Bjarnason, I de Bruijn, M Schirmer, J Quick, Umer Ijaz, Leo Mikael Lahti, NJ Loman, AF Andersson, Christopher Quince

Research output: Non-textual formSoftwareScientific

Abstract

A program for unsupervised binning of metagenomic contigs by using nucleotide composition, coverage data in multiple samples and linkage data from paired end reads.
Original languageEnglish
Publication statusPublished - 2014
MoE publication typeI2 ICT software

Fields of Science

  • 113 Computer and information sciences
  • bioinformatics
  • sequencing
  • metagenomics

Cite this

Alneberg, J. (Author), Bjarnason, BS. (Author), de Bruijn, I. (Author), Schirmer, M. (Author), Quick, J. (Author), Ijaz, U. (Author), Lahti, L. M. (Author), Loman, NJ. (Author), Andersson, AF. (Author), & Quince, C. (Author). (2014). Clustering cONtigs with COverage and ComposiTion (CONCOCT). Software https://github.com/BinPro/CONCOCT