Clustering cONtigs with COverage and ComposiTion (CONCOCT)

J Alneberg, BS Bjarnason, I de Bruijn, M Schirmer, J Quick, Umer Ijaz, Leo Mikael Lahti, NJ Loman, AF Andersson, Christopher Quince

Research output: Non-textual formSoftwareScientific

Abstract

A program for unsupervised binning of metagenomic contigs by using nucleotide composition, coverage data in multiple samples and linkage data from paired end reads.
Original languageEnglish
Publication statusPublished - 2014
MoE publication typeI2 ICT software

Fields of Science

  • 113 Computer and information sciences
  • bioinformatics
  • sequencing
  • metagenomics

Cite this

Alneberg, J. (Author), Bjarnason, BS. (Author), de Bruijn, I. (Author), Schirmer, M. (Author), Quick, J. (Author), Ijaz, U. (Author), ... Quince, C. (Author). (2014). Clustering cONtigs with COverage and ComposiTion (CONCOCT). Software, Retrieved from https://github.com/BinPro/CONCOCT
Alneberg, J (Author) ; Bjarnason, BS (Author) ; de Bruijn, I (Author) ; Schirmer, M (Author) ; Quick, J (Author) ; Ijaz, Umer (Author) ; Lahti, Leo Mikael (Author) ; Loman, NJ (Author) ; Andersson, AF (Author) ; Quince, Christopher (Author). / Clustering cONtigs with COverage and ComposiTion (CONCOCT). [Software].
@misc{6da760b355f749d0bd6fb6f1921d2b04,
title = "Clustering cONtigs with COverage and ComposiTion (CONCOCT)",
abstract = "A program for unsupervised binning of metagenomic contigs by using nucleotide composition, coverage data in multiple samples and linkage data from paired end reads.",
keywords = "113 Computer and information sciences, bioinformatics, sequencing, metagenomics",
author = "J Alneberg and BS Bjarnason and {de Bruijn}, I and M Schirmer and J Quick and Umer Ijaz and Lahti, {Leo Mikael} and NJ Loman and AF Andersson and Christopher Quince",
year = "2014",
language = "English",

}

Alneberg, J, Bjarnason, BS, de Bruijn, I, Schirmer, M, Quick, J, Ijaz, U, Lahti, LM, Loman, NJ, Andersson, AF & Quince, C, Clustering cONtigs with COverage and ComposiTion (CONCOCT), 2014, Software.
Clustering cONtigs with COverage and ComposiTion (CONCOCT). Alneberg, J (Author); Bjarnason, BS (Author); de Bruijn, I (Author); Schirmer, M (Author); Quick, J (Author); Ijaz, Umer (Author); Lahti, Leo Mikael (Author); Loman, NJ (Author); Andersson, AF (Author); Quince, Christopher (Author). 2014.

Research output: Non-textual formSoftwareScientific

TY - ADVS

T1 - Clustering cONtigs with COverage and ComposiTion (CONCOCT)

AU - Alneberg, J

AU - Bjarnason, BS

AU - de Bruijn, I

AU - Schirmer, M

AU - Quick, J

AU - Ijaz, Umer

AU - Lahti, Leo Mikael

AU - Loman, NJ

AU - Andersson, AF

AU - Quince, Christopher

PY - 2014

Y1 - 2014

N2 - A program for unsupervised binning of metagenomic contigs by using nucleotide composition, coverage data in multiple samples and linkage data from paired end reads.

AB - A program for unsupervised binning of metagenomic contigs by using nucleotide composition, coverage data in multiple samples and linkage data from paired end reads.

KW - 113 Computer and information sciences

KW - bioinformatics

KW - sequencing

KW - metagenomics

M3 - Software

ER -

Alneberg J (Author), Bjarnason BS (Author), de Bruijn I (Author), Schirmer M (Author), Quick J (Author), Ijaz U (Author) et al. Clustering cONtigs with COverage and ComposiTion (CONCOCT) 2014.