Colib'read on galaxy: a tools suite dedicated to biological information extraction from raw NGS reads

Yvan Le Bras; Olivier Collin; Cyril Monjeaud; Vincent Lacroix; Eric Rivals; Claire Lemaitre; Vincent Miele; Gustavo Sacomoto; Camille Marchet; Bastien Cazaux; Amal Zine El Aabidine; Leena Salmela; Susete Alves-Carvalho; Alexan Andrieux; Raluca Uricaru; Pierre Peterlongo

doi:10.1186/s13742-015-0105-2

Colib'read on galaxy: a tools suite dedicated to biological information extraction from raw NGS reads

Yvan Le Bras, Olivier Collin, Cyril Monjeaud, Vincent Lacroix, Eric Rivals, Claire Lemaitre, Vincent Miele, Gustavo Sacomoto, Camille Marchet, Bastien Cazaux, Amal Zine El Aabidine, Leena Salmela, Susete Alves-Carvalho, Alexan Andrieux, Raluca Uricaru, Pierre Peterlongo

Research output: Contribution to journal › Article › Scientific › peer-review

Original language	English
Article number	9
Journal	GigaScience
Volume	5
Number of pages	14
ISSN	2047-217X
DOIs	https://doi.org/10.1186/s13742-015-0105-2
Publication status	Published - 11 Feb 2016
MoE publication type	A1 Journal article-refereed

Fields of Science

NGS
Metagenomics
RNA-seq
Variant calling
Whole-genome assembly-less treatment
De Bruijn graph
Bloom filter
long read correction
GENOME
113 Computer and information sciences

Access to Document

10.1186/s13742-015-0105-2Licence: CC BY

13742_2015_Article_105Licence: CC BY

Cite this

Le Bras, Y., Collin, O., Monjeaud, C., Lacroix, V., Rivals, E., Lemaitre, C., Miele, V., Sacomoto, G., Marchet, C., Cazaux, B., El Aabidine, A. Z., Salmela, L., Alves-Carvalho, S., Andrieux, A., Uricaru, R., & Peterlongo, P. (2016). Colib'read on galaxy: a tools suite dedicated to biological information extraction from raw NGS reads. GigaScience, 5, Article 9. https://doi.org/10.1186/s13742-015-0105-2

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Le Bras, Y, Collin, O, Monjeaud, C, Lacroix, V, Rivals, E, Lemaitre, C, Miele, V, Sacomoto, G, Marchet, C, Cazaux, B, El Aabidine, AZ, Salmela, L, Alves-Carvalho, S, Andrieux, A, Uricaru, R & Peterlongo, P 2016, 'Colib'read on galaxy: a tools suite dedicated to biological information extraction from raw NGS reads', GigaScience, vol. 5, 9. https://doi.org/10.1186/s13742-015-0105-2

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T1 - Colib'read on galaxy

T2 - a tools suite dedicated to biological information extraction from raw NGS reads

AU - Le Bras, Yvan

AU - Collin, Olivier

AU - Monjeaud, Cyril

AU - Lacroix, Vincent

AU - Rivals, Eric

AU - Lemaitre, Claire

AU - Miele, Vincent

AU - Sacomoto, Gustavo

AU - Marchet, Camille

AU - Cazaux, Bastien

AU - El Aabidine, Amal Zine

AU - Salmela, Leena

AU - Alves-Carvalho, Susete

AU - Andrieux, Alexan

AU - Uricaru, Raluca

AU - Peterlongo, Pierre

PY - 2016/2/11

Y1 - 2016/2/11

KW - NGS

KW - Metagenomics

KW - RNA-seq

KW - Variant calling

KW - Whole-genome assembly-less treatment

KW - De Bruijn graph

KW - Bloom filter

KW - long read correction

KW - GENOME

KW - 113 Computer and information sciences

U2 - 10.1186/s13742-015-0105-2

DO - 10.1186/s13742-015-0105-2

M3 - Article

SN - 2047-217X

VL - 5

JO - GigaScience

JF - GigaScience

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