Combined Analysis of Variation in Core, Accessory and Regulatory Genome Regions Provides a Super-Resolution View into the Evolution of Bacterial Populations

Alan McNally, Yaara Oren, Darren Kelly, Ben Pascoe, Steven Dunn, Tristan Sreecharan, Minna Vehkala, Niko Välimäki, Michael B. Prentice, Amgad Ashour, Oren Avram, Tal Pupko, Ulrich Dobrindt, Ivan Literak, Sebastian Guenther, Katharina Schaufler, Lothar H. Wieler, Zong Zhiyong, Samuel K. Sheppard, James O. McInerneyJukka Corander

Research output: Contribution to journalArticleScientificpeer-review

Original languageEnglish
Article number1006280
JournalPLoS Genetics
Volume12
Issue number9
Number of pages16
ISSN1553-7404
DOIs
Publication statusPublished - Sep 2016
MoE publication typeA1 Journal article-refereed

Fields of Science

  • RESISTANT ESCHERICHIA-COLI
  • PHYLOGENETIC TREES
  • ST131 CLONE
  • OUTBREAK
  • ANNOTATION
  • DIVERSITY
  • EMERGENCE
  • PLASMIDS
  • 1184 Genetics, developmental biology, physiology

Cite this

McNally, Alan ; Oren, Yaara ; Kelly, Darren ; Pascoe, Ben ; Dunn, Steven ; Sreecharan, Tristan ; Vehkala, Minna ; Välimäki, Niko ; Prentice, Michael B. ; Ashour, Amgad ; Avram, Oren ; Pupko, Tal ; Dobrindt, Ulrich ; Literak, Ivan ; Guenther, Sebastian ; Schaufler, Katharina ; Wieler, Lothar H. ; Zong Zhiyong ; Sheppard, Samuel K. ; McInerney, James O. ; Corander, Jukka. / Combined Analysis of Variation in Core, Accessory and Regulatory Genome Regions Provides a Super-Resolution View into the Evolution of Bacterial Populations. In: PLoS Genetics. 2016 ; Vol. 12, No. 9.
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title = "Combined Analysis of Variation in Core, Accessory and Regulatory Genome Regions Provides a Super-Resolution View into the Evolution of Bacterial Populations",
keywords = "RESISTANT ESCHERICHIA-COLI, PHYLOGENETIC TREES, ST131 CLONE, OUTBREAK, ANNOTATION, DIVERSITY, EMERGENCE, PLASMIDS, 1184 Genetics, developmental biology, physiology",
author = "Alan McNally and Yaara Oren and Darren Kelly and Ben Pascoe and Steven Dunn and Tristan Sreecharan and Minna Vehkala and Niko V{\"a}lim{\"a}ki and Prentice, {Michael B.} and Amgad Ashour and Oren Avram and Tal Pupko and Ulrich Dobrindt and Ivan Literak and Sebastian Guenther and Katharina Schaufler and Wieler, {Lothar H.} and {Zong Zhiyong} and Sheppard, {Samuel K.} and McInerney, {James O.} and Jukka Corander",
year = "2016",
month = "9",
doi = "10.1371/journal.pgen.1006280",
language = "English",
volume = "12",
journal = "PLoS Genetics",
issn = "1553-7390",
publisher = "PUBLIC LIBRARY OF SCIENCE",
number = "9",

}

McNally, A, Oren, Y, Kelly, D, Pascoe, B, Dunn, S, Sreecharan, T, Vehkala, M, Välimäki, N, Prentice, MB, Ashour, A, Avram, O, Pupko, T, Dobrindt, U, Literak, I, Guenther, S, Schaufler, K, Wieler, LH, Zong Zhiyong, Sheppard, SK, McInerney, JO & Corander, J 2016, 'Combined Analysis of Variation in Core, Accessory and Regulatory Genome Regions Provides a Super-Resolution View into the Evolution of Bacterial Populations', PLoS Genetics, vol. 12, no. 9, 1006280. https://doi.org/10.1371/journal.pgen.1006280

Combined Analysis of Variation in Core, Accessory and Regulatory Genome Regions Provides a Super-Resolution View into the Evolution of Bacterial Populations. / McNally, Alan; Oren, Yaara; Kelly, Darren; Pascoe, Ben; Dunn, Steven; Sreecharan, Tristan; Vehkala, Minna; Välimäki, Niko; Prentice, Michael B.; Ashour, Amgad; Avram, Oren; Pupko, Tal; Dobrindt, Ulrich; Literak, Ivan; Guenther, Sebastian; Schaufler, Katharina; Wieler, Lothar H.; Zong Zhiyong; Sheppard, Samuel K.; McInerney, James O.; Corander, Jukka.

In: PLoS Genetics, Vol. 12, No. 9, 1006280, 09.2016.

Research output: Contribution to journalArticleScientificpeer-review

TY - JOUR

T1 - Combined Analysis of Variation in Core, Accessory and Regulatory Genome Regions Provides a Super-Resolution View into the Evolution of Bacterial Populations

AU - McNally, Alan

AU - Oren, Yaara

AU - Kelly, Darren

AU - Pascoe, Ben

AU - Dunn, Steven

AU - Sreecharan, Tristan

AU - Vehkala, Minna

AU - Välimäki, Niko

AU - Prentice, Michael B.

AU - Ashour, Amgad

AU - Avram, Oren

AU - Pupko, Tal

AU - Dobrindt, Ulrich

AU - Literak, Ivan

AU - Guenther, Sebastian

AU - Schaufler, Katharina

AU - Wieler, Lothar H.

AU - Zong Zhiyong, null

AU - Sheppard, Samuel K.

AU - McInerney, James O.

AU - Corander, Jukka

PY - 2016/9

Y1 - 2016/9

KW - RESISTANT ESCHERICHIA-COLI

KW - PHYLOGENETIC TREES

KW - ST131 CLONE

KW - OUTBREAK

KW - ANNOTATION

KW - DIVERSITY

KW - EMERGENCE

KW - PLASMIDS

KW - 1184 Genetics, developmental biology, physiology

U2 - 10.1371/journal.pgen.1006280

DO - 10.1371/journal.pgen.1006280

M3 - Article

VL - 12

JO - PLoS Genetics

JF - PLoS Genetics

SN - 1553-7390

IS - 9

M1 - 1006280

ER -