Comprehensive global genome dynamics of Chlamydia trachomatis show ancient diversification followed by contemporary mixing and recent lineage expansion

James Hadfield; Simon R. Harris; Helena M. B. Seth-Smith; Surendra Parmar; Patiyan Andersson; Philip M. Giffard; Julius Schachter; Jeanne Moncada; Louise Ellison; Maria Lucia Gallo Vaulet; Marcelo Rodriguez Fermepin; Frans Radebe; Suyapa Mendoza; Sander Ouburg; Servaas A. Morre; Konrad Sachse; Mirja Puolakkainen; Suvi J. Korhonen; Chris Sonnex; Rebecca Wiggins; Hamid Jalal; Tamara Brunelli; Patrizia Casprini; Rachel Pitt; Cathy Ison; Alevtina Savicheva; Elena Shipitsyna; Ronza Hadad; Laszlo Kari; Matthew J. Burton; David Mabey; Anthony W. Solomon; David Lewis; Peter Marsh; Magnus Unemo; Ian N. Clarke; Julian Parkhill; Nicholas R. Thomson

doi:10.1101/gr.212647.116

Comprehensive global genome dynamics of Chlamydia trachomatis show ancient diversification followed by contemporary mixing and recent lineage expansion

James Hadfield, Simon R. Harris, Helena M. B. Seth-Smith, Surendra Parmar, Patiyan Andersson, Philip M. Giffard, Julius Schachter, Jeanne Moncada, Louise Ellison, Maria Lucia Gallo Vaulet, Marcelo Rodriguez Fermepin, Frans Radebe, Suyapa Mendoza, Sander Ouburg, Servaas A. Morre, Konrad Sachse, Mirja Puolakkainen, Suvi J. Korhonen, Chris Sonnex, Rebecca WigginsHamid Jalal, Tamara Brunelli, Patrizia Casprini, Rachel Pitt, Cathy Ison, Alevtina Savicheva, Elena Shipitsyna, Ronza Hadad, Laszlo Kari, Matthew J. Burton, David Mabey, Anthony W. Solomon, David Lewis, Peter Marsh, Magnus Unemo, Ian N. Clarke, Julian Parkhill, Nicholas R. Thomson

Research output: Contribution to journal › Article › Scientific › peer-review

Original language	English
Journal	Genome Research
Volume	27
Issue number	7
Pages (from-to)	1220-1229
Number of pages	10
ISSN	1088-9051
DOIs	https://doi.org/10.1101/gr.212647.116
Publication status	Published - Jul 2017
MoE publication type	A1 Journal article-refereed

Fields of Science

PHENOTYPIC CHARACTERIZATION
INTRACELLULAR PATHOGEN
ANTIBIOTIC-RESISTANCE
CLINICAL-SAMPLES
HIGH-THROUGHPUT
IN-VITRO
SEQUENCE
RECOMBINATION
EVOLUTION
GENE
3111 Biomedicine

Access to Document

10.1101/gr.212647.116

Cite this

Hadfield, J., Harris, S. R., Seth-Smith, H. M. B., Parmar, S., Andersson, P., Giffard, P. M., Schachter, J., Moncada, J., Ellison, L., Gallo Vaulet, M. L., Rodriguez Fermepin, M., Radebe, F., Mendoza, S., Ouburg, S., Morre, S. A., Sachse, K., Puolakkainen, M., Korhonen, S. J., Sonnex, C., ... Thomson, N. R. (2017). Comprehensive global genome dynamics of Chlamydia trachomatis show ancient diversification followed by contemporary mixing and recent lineage expansion. Genome Research, 27(7), 1220-1229. https://doi.org/10.1101/gr.212647.116

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title = "Comprehensive global genome dynamics of Chlamydia trachomatis show ancient diversification followed by contemporary mixing and recent lineage expansion",

keywords = "PHENOTYPIC CHARACTERIZATION, INTRACELLULAR PATHOGEN, ANTIBIOTIC-RESISTANCE, CLINICAL-SAMPLES, HIGH-THROUGHPUT, IN-VITRO, SEQUENCE, RECOMBINATION, EVOLUTION, GENE, 3111 Biomedicine",

author = "James Hadfield and Harris, {Simon R.} and Seth-Smith, {Helena M. B.} and Surendra Parmar and Patiyan Andersson and Giffard, {Philip M.} and Julius Schachter and Jeanne Moncada and Louise Ellison and {Gallo Vaulet}, {Maria Lucia} and {Rodriguez Fermepin}, Marcelo and Frans Radebe and Suyapa Mendoza and Sander Ouburg and Morre, {Servaas A.} and Konrad Sachse and Mirja Puolakkainen and Korhonen, {Suvi J.} and Chris Sonnex and Rebecca Wiggins and Hamid Jalal and Tamara Brunelli and Patrizia Casprini and Rachel Pitt and Cathy Ison and Alevtina Savicheva and Elena Shipitsyna and Ronza Hadad and Laszlo Kari and Burton, {Matthew J.} and David Mabey and Solomon, {Anthony W.} and David Lewis and Peter Marsh and Magnus Unemo and Clarke, {Ian N.} and Julian Parkhill and Thomson, {Nicholas R.}",

year = "2017",

month = jul,

doi = "10.1101/gr.212647.116",

language = "English",

volume = "27",

pages = "1220--1229",

journal = "Genome Research",

issn = "1088-9051",

publisher = "Cold Spring Harbor Laboratory Press",

number = "7",

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Hadfield, J, Harris, SR, Seth-Smith, HMB, Parmar, S, Andersson, P, Giffard, PM, Schachter, J, Moncada, J, Ellison, L, Gallo Vaulet, ML, Rodriguez Fermepin, M, Radebe, F, Mendoza, S, Ouburg, S, Morre, SA, Sachse, K, Puolakkainen, M , Korhonen, SJ, Sonnex, C, Wiggins, R, Jalal, H, Brunelli, T, Casprini, P, Pitt, R, Ison, C, Savicheva, A, Shipitsyna, E, Hadad, R, Kari, L, Burton, MJ, Mabey, D, Solomon, AW, Lewis, D, Marsh, P, Unemo, M, Clarke, IN, Parkhill, J & Thomson, NR 2017, 'Comprehensive global genome dynamics of Chlamydia trachomatis show ancient diversification followed by contemporary mixing and recent lineage expansion', Genome Research, vol. 27, no. 7, pp. 1220-1229. https://doi.org/10.1101/gr.212647.116

TY - JOUR

T1 - Comprehensive global genome dynamics of Chlamydia trachomatis show ancient diversification followed by contemporary mixing and recent lineage expansion

AU - Hadfield, James

AU - Harris, Simon R.

AU - Seth-Smith, Helena M. B.

AU - Parmar, Surendra

AU - Andersson, Patiyan

AU - Giffard, Philip M.

AU - Schachter, Julius

AU - Moncada, Jeanne

AU - Ellison, Louise

AU - Gallo Vaulet, Maria Lucia

AU - Rodriguez Fermepin, Marcelo

AU - Radebe, Frans

AU - Mendoza, Suyapa

AU - Ouburg, Sander

AU - Morre, Servaas A.

AU - Sachse, Konrad

AU - Puolakkainen, Mirja

AU - Korhonen, Suvi J.

AU - Sonnex, Chris

AU - Wiggins, Rebecca

AU - Jalal, Hamid

AU - Brunelli, Tamara

AU - Casprini, Patrizia

AU - Pitt, Rachel

AU - Ison, Cathy

AU - Savicheva, Alevtina

AU - Shipitsyna, Elena

AU - Hadad, Ronza

AU - Kari, Laszlo

AU - Burton, Matthew J.

AU - Mabey, David

AU - Solomon, Anthony W.

AU - Lewis, David

AU - Marsh, Peter

AU - Unemo, Magnus

AU - Clarke, Ian N.

AU - Parkhill, Julian

AU - Thomson, Nicholas R.

PY - 2017/7

Y1 - 2017/7

KW - PHENOTYPIC CHARACTERIZATION

KW - INTRACELLULAR PATHOGEN

KW - ANTIBIOTIC-RESISTANCE

KW - CLINICAL-SAMPLES

KW - HIGH-THROUGHPUT

KW - IN-VITRO

KW - SEQUENCE

KW - RECOMBINATION

KW - EVOLUTION

KW - GENE

KW - 3111 Biomedicine

U2 - 10.1101/gr.212647.116

DO - 10.1101/gr.212647.116

M3 - Article

SN - 1088-9051

VL - 27

SP - 1220

EP - 1229

JO - Genome Research

JF - Genome Research

IS - 7

ER -