Computational pan-genomics: status, promises and challenges

The Computational Pan-Genomics Consortium, Veli Antti Tapani Mäkinen, Serra Daniel Alejandro Valenzuela

Research output: Contribution to journalArticleScientificpeer-review

Original languageEnglish
JournalBriefings in Bioinformatics
Volume19
Issue number1
Pages (from-to)118-135
Number of pages18
ISSN1467-5463
DOIs
Publication statusPublished - Jan 2018
MoE publication typeA1 Journal article-refereed

Fields of Science

  • 1182 Biochemistry, cell and molecular biology
  • 113 Computer and information sciences
  • pan-genome
  • sequence graph
  • read mapping
  • haplotypes
  • data structures
  • MULTIPLE SEQUENCE ALIGNMENT
  • BURROWS-WHEELER TRANSFORM
  • DE-BRUIJN GRAPHS
  • GENETIC-VARIATION
  • WIDE ASSOCIATION
  • VIRAL METAGENOMICS
  • HIGH-RESOLUTION
  • CANCER GENOMES
  • LONG READS
  • POPULATION

Cite this

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title = "Computational pan-genomics: status, promises and challenges",
keywords = "1182 Biochemistry, cell and molecular biology, 113 Computer and information sciences, pan-genome, sequence graph, read mapping, haplotypes, data structures, MULTIPLE SEQUENCE ALIGNMENT, BURROWS-WHEELER TRANSFORM, DE-BRUIJN GRAPHS, GENETIC-VARIATION, WIDE ASSOCIATION, VIRAL METAGENOMICS, HIGH-RESOLUTION, CANCER GENOMES, LONG READS, POPULATION",
author = "Tobias Marschall and {The Computational Pan-Genomics Consortium} and M{\"a}kinen, {Veli Antti Tapani} and Valenzuela, {Serra Daniel Alejandro}",
year = "2018",
month = "1",
doi = "10.1093/bib/bbw089",
language = "English",
volume = "19",
pages = "118--135",
journal = "Briefings in Bioinformatics",
issn = "1467-5463",
publisher = "Oxford University Press",
number = "1",

}

Computational pan-genomics : status, promises and challenges. / The Computational Pan-Genomics Consortium ; Mäkinen, Veli Antti Tapani; Valenzuela, Serra Daniel Alejandro.

In: Briefings in Bioinformatics, Vol. 19, No. 1, 01.2018, p. 118-135.

Research output: Contribution to journalArticleScientificpeer-review

TY - JOUR

T1 - Computational pan-genomics

T2 - status, promises and challenges

AU - Marschall, Tobias

AU - The Computational Pan-Genomics Consortium

AU - Mäkinen, Veli Antti Tapani

AU - Valenzuela, Serra Daniel Alejandro

PY - 2018/1

Y1 - 2018/1

KW - 1182 Biochemistry, cell and molecular biology

KW - 113 Computer and information sciences

KW - pan-genome

KW - sequence graph

KW - read mapping

KW - haplotypes

KW - data structures

KW - MULTIPLE SEQUENCE ALIGNMENT

KW - BURROWS-WHEELER TRANSFORM

KW - DE-BRUIJN GRAPHS

KW - GENETIC-VARIATION

KW - WIDE ASSOCIATION

KW - VIRAL METAGENOMICS

KW - HIGH-RESOLUTION

KW - CANCER GENOMES

KW - LONG READS

KW - POPULATION

U2 - 10.1093/bib/bbw089

DO - 10.1093/bib/bbw089

M3 - Article

VL - 19

SP - 118

EP - 135

JO - Briefings in Bioinformatics

JF - Briefings in Bioinformatics

SN - 1467-5463

IS - 1

ER -