De novo assembly of genomes from long sequence reads reveals uncharted territories of Propionibacterium freudenreichii

Research output: Contribution to journalArticleScientificpeer-review

Original languageEnglish
Article number790
JournalBMC Genomics
Volume18
Number of pages24
ISSN1471-2164
DOIs
Publication statusPublished - 16 Oct 2017
MoE publication typeA1 Journal article-refereed

Fields of Science

  • Propionibacterium freudenreichii
  • Comparative genomics
  • Bacteriophage
  • Pilus
  • Vitamin B12
  • PacBio
  • Complete genome
  • Mobile elements
  • Restriction and modification
  • CRISPR-Cas
  • Gras
  • CHAIN FATTY-ACIDS
  • SSP SHERMANII JS
  • ANTIINFLAMMATORY PROPERTIES
  • PROKARYOTIC GENOMES
  • ADAPTIVE IMMUNITY
  • INTESTINAL MUCUS
  • BACTERIA
  • TOOL
  • METABOLISM
  • INSIGHTS
  • 1183 Plant biology, microbiology, virology
  • 1184 Genetics, developmental biology, physiology

Cite this

@article{feb73b1b475d4937893fd5064fc0dd0f,
title = "De novo assembly of genomes from long sequence reads reveals uncharted territories of Propionibacterium freudenreichii",
keywords = "Propionibacterium freudenreichii, Comparative genomics, Bacteriophage, Pilus, Vitamin B12, PacBio, Complete genome, Mobile elements, Restriction and modification, CRISPR-Cas, Gras, CHAIN FATTY-ACIDS, SSP SHERMANII JS, ANTIINFLAMMATORY PROPERTIES, PROKARYOTIC GENOMES, ADAPTIVE IMMUNITY, INTESTINAL MUCUS, BACTERIA, TOOL, METABOLISM, INSIGHTS, 1183 Plant biology, microbiology, virology, 1184 Genetics, developmental biology, physiology",
author = "Paulina Deptula and Laine, {Pia K.} and Roberts, {Richard J.} and Olli-Pekka Smolander and Helena Vihinen and Vieno Piironen and Lars Paulin and Eija Jokitalo and Kirsi Savijoki and Petri Auvinen and Pekka Varmanen",
year = "2017",
month = "10",
day = "16",
doi = "10.1186/s12864-017-4165-9",
language = "English",
volume = "18",
journal = "BMC Genomics",
issn = "1471-2164",
publisher = "BMC",

}

TY - JOUR

T1 - De novo assembly of genomes from long sequence reads reveals uncharted territories of Propionibacterium freudenreichii

AU - Deptula, Paulina

AU - Laine, Pia K.

AU - Roberts, Richard J.

AU - Smolander, Olli-Pekka

AU - Vihinen, Helena

AU - Piironen, Vieno

AU - Paulin, Lars

AU - Jokitalo, Eija

AU - Savijoki, Kirsi

AU - Auvinen, Petri

AU - Varmanen, Pekka

PY - 2017/10/16

Y1 - 2017/10/16

KW - Propionibacterium freudenreichii

KW - Comparative genomics

KW - Bacteriophage

KW - Pilus

KW - Vitamin B12

KW - PacBio

KW - Complete genome

KW - Mobile elements

KW - Restriction and modification

KW - CRISPR-Cas

KW - Gras

KW - CHAIN FATTY-ACIDS

KW - SSP SHERMANII JS

KW - ANTIINFLAMMATORY PROPERTIES

KW - PROKARYOTIC GENOMES

KW - ADAPTIVE IMMUNITY

KW - INTESTINAL MUCUS

KW - BACTERIA

KW - TOOL

KW - METABOLISM

KW - INSIGHTS

KW - 1183 Plant biology, microbiology, virology

KW - 1184 Genetics, developmental biology, physiology

U2 - 10.1186/s12864-017-4165-9

DO - 10.1186/s12864-017-4165-9

M3 - Article

VL - 18

JO - BMC Genomics

JF - BMC Genomics

SN - 1471-2164

M1 - 790

ER -