Extraction and analysis of signatures from the Gene Expression Omnibus by the crowd

Zichen Wang; Caroline D. Monteiro; Kathleen M. Jagodnik; Nicolas F. Fernandez; Gregory W. Gundersen; Andrew D. Rouillard; Sherry L. Jenkins; Axel S. Feldmann; Kevin S. Hu; Michael G. McDermott; Qiaonan Duan; Neil R. Clark; Matthew R. Jones; Yan Kou; Troy Goff; Holly Woodland; Fabio M. R. Amaral; Gregory L. Szeto; Oliver Fuchs; Sophia M. Schussler-Fiorenza Rose; Shvetank Sharma; Uwe Schwartz; Xabier Bengoetxea Bausela; Maciej Szymkiewicz; Vasileios Maroulis; Anton Salykin; Carolina M. Barra; Candice D. Kruth; Nicholas J. Bongio; Vaibhav Mathur; Radmila D. Todoric; Udi E. Rubin; Apostolos Malatras; Carl T. Fulp; John A. Galindo; Ruta Motiejunaite; Christoph Jueschke; Philip C. Dishuck; Katharina Lahl; Mohieddin Jafari; Sara Aibar; Apostolos Zaravinos; Linda H. Steenhuizen; Lindsey R. Allison; Pablo Gamallo; Fernando de Andres Segura; Tyler Dae Devlin; Vicente Perez-Garcia; Avi Ma'ayan

doi:10.1038/ncomms12846

Extraction and analysis of signatures from the Gene Expression Omnibus by the crowd

Zichen Wang, Caroline D. Monteiro, Kathleen M. Jagodnik, Nicolas F. Fernandez, Gregory W. Gundersen, Andrew D. Rouillard, Sherry L. Jenkins, Axel S. Feldmann, Kevin S. Hu, Michael G. McDermott, Qiaonan Duan, Neil R. Clark, Matthew R. Jones, Yan Kou, Troy Goff, Holly Woodland, Fabio M. R. Amaral, Gregory L. Szeto, Oliver Fuchs, Sophia M. Schussler-Fiorenza RoseShvetank Sharma, Uwe Schwartz, Xabier Bengoetxea Bausela, Maciej Szymkiewicz, Vasileios Maroulis, Anton Salykin, Carolina M. Barra, Candice D. Kruth, Nicholas J. Bongio, Vaibhav Mathur, Radmila D. Todoric, Udi E. Rubin, Apostolos Malatras, Carl T. Fulp, John A. Galindo, Ruta Motiejunaite, Christoph Jueschke, Philip C. Dishuck, Katharina Lahl, Mohieddin Jafari, Sara Aibar, Apostolos Zaravinos, Linda H. Steenhuizen, Lindsey R. Allison, Pablo Gamallo, Fernando de Andres Segura, Tyler Dae Devlin, Vicente Perez-Garcia, Avi Ma'ayan

Research output: Contribution to journal › Article › Scientific › peer-review

Original language	English
Article number	12846
Journal	Nature Communications
Volume	7
Number of pages	11
ISSN	2041-1723
DOIs	https://doi.org/10.1038/ncomms12846
Publication status	Published - Sep 2016
Externally published	Yes
MoE publication type	A1 Journal article-refereed

Fields of Science

FACIOSCAPULOHUMERAL MUSCULAR-DYSTROPHY
ENDOMETRIAL CANCER-RISK
ESTROGEN-RECEPTOR
HEPATOCELLULAR-CARCINOMA
DIFFERENTIAL EXPRESSION
DATABASE
DISEASE
DISCOVERY
INSULIN
GROWTH
3111 Biomedicine
3122 Cancers

Access to Document

10.1038/ncomms12846

ncomms12846Final published version, 1.43 MBLicence: CC BY

Cite this

Wang, Z., Monteiro, C. D., Jagodnik, K. M., Fernandez, N. F., Gundersen, G. W., Rouillard, A. D., Jenkins, S. L., Feldmann, A. S., Hu, K. S., McDermott, M. G., Duan, Q., Clark, N. R., Jones, M. R., Kou, Y., Goff, T., Woodland, H., Amaral, F. M. R., Szeto, G. L., Fuchs, O., ... Ma'ayan, A. (2016). Extraction and analysis of signatures from the Gene Expression Omnibus by the crowd. Nature Communications, 7, [12846]. https://doi.org/10.1038/ncomms12846

@article{eaa3e097ba4f4e2f80c2c330576b5932,

title = "Extraction and analysis of signatures from the Gene Expression Omnibus by the crowd",

keywords = "FACIOSCAPULOHUMERAL MUSCULAR-DYSTROPHY, ENDOMETRIAL CANCER-RISK, ESTROGEN-RECEPTOR, HEPATOCELLULAR-CARCINOMA, DIFFERENTIAL EXPRESSION, DATABASE, DISEASE, DISCOVERY, INSULIN, GROWTH, 3111 Biomedicine, 3122 Cancers",

author = "Zichen Wang and Monteiro, {Caroline D.} and Jagodnik, {Kathleen M.} and Fernandez, {Nicolas F.} and Gundersen, {Gregory W.} and Rouillard, {Andrew D.} and Jenkins, {Sherry L.} and Feldmann, {Axel S.} and Hu, {Kevin S.} and McDermott, {Michael G.} and Qiaonan Duan and Clark, {Neil R.} and Jones, {Matthew R.} and Yan Kou and Troy Goff and Holly Woodland and Amaral, {Fabio M. R.} and Szeto, {Gregory L.} and Oliver Fuchs and Rose, {Sophia M. Schussler-Fiorenza} and Shvetank Sharma and Uwe Schwartz and {Bengoetxea Bausela}, Xabier and Maciej Szymkiewicz and Vasileios Maroulis and Anton Salykin and Barra, {Carolina M.} and Kruth, {Candice D.} and Bongio, {Nicholas J.} and Vaibhav Mathur and Todoric, {Radmila D.} and Rubin, {Udi E.} and Apostolos Malatras and Fulp, {Carl T.} and Galindo, {John A.} and Ruta Motiejunaite and Christoph Jueschke and Dishuck, {Philip C.} and Katharina Lahl and Mohieddin Jafari and Sara Aibar and Apostolos Zaravinos and Steenhuizen, {Linda H.} and Allison, {Lindsey R.} and Pablo Gamallo and {de Andres Segura}, Fernando and Devlin, {Tyler Dae} and Vicente Perez-Garcia and Avi Ma'ayan",

year = "2016",

month = sep,

doi = "10.1038/ncomms12846",

language = "English",

volume = "7",

journal = "Nature Communications",

issn = "2041-1723",

publisher = "Nature Publishing Group",

}

Wang, Z, Monteiro, CD, Jagodnik, KM, Fernandez, NF, Gundersen, GW, Rouillard, AD, Jenkins, SL, Feldmann, AS, Hu, KS, McDermott, MG, Duan, Q, Clark, NR, Jones, MR, Kou, Y, Goff, T, Woodland, H, Amaral, FMR, Szeto, GL, Fuchs, O, Rose, SMS-F, Sharma, S, Schwartz, U, Bengoetxea Bausela, X, Szymkiewicz, M, Maroulis, V, Salykin, A, Barra, CM, Kruth, CD, Bongio, NJ, Mathur, V, Todoric, RD, Rubin, UE, Malatras, A, Fulp, CT, Galindo, JA, Motiejunaite, R, Jueschke, C, Dishuck, PC, Lahl, K, Jafari, M, Aibar, S, Zaravinos, A, Steenhuizen, LH, Allison, LR, Gamallo, P, de Andres Segura, F, Devlin, TD, Perez-Garcia, V & Ma'ayan, A 2016, 'Extraction and analysis of signatures from the Gene Expression Omnibus by the crowd', Nature Communications, vol. 7, 12846. https://doi.org/10.1038/ncomms12846

TY - JOUR

T1 - Extraction and analysis of signatures from the Gene Expression Omnibus by the crowd

AU - Wang, Zichen

AU - Monteiro, Caroline D.

AU - Jagodnik, Kathleen M.

AU - Fernandez, Nicolas F.

AU - Gundersen, Gregory W.

AU - Rouillard, Andrew D.

AU - Jenkins, Sherry L.

AU - Feldmann, Axel S.

AU - Hu, Kevin S.

AU - McDermott, Michael G.

AU - Duan, Qiaonan

AU - Clark, Neil R.

AU - Jones, Matthew R.

AU - Kou, Yan

AU - Goff, Troy

AU - Woodland, Holly

AU - Amaral, Fabio M. R.

AU - Szeto, Gregory L.

AU - Fuchs, Oliver

AU - Rose, Sophia M. Schussler-Fiorenza

AU - Sharma, Shvetank

AU - Schwartz, Uwe

AU - Bengoetxea Bausela, Xabier

AU - Szymkiewicz, Maciej

AU - Maroulis, Vasileios

AU - Salykin, Anton

AU - Barra, Carolina M.

AU - Kruth, Candice D.

AU - Bongio, Nicholas J.

AU - Mathur, Vaibhav

AU - Todoric, Radmila D.

AU - Rubin, Udi E.

AU - Malatras, Apostolos

AU - Fulp, Carl T.

AU - Galindo, John A.

AU - Motiejunaite, Ruta

AU - Jueschke, Christoph

AU - Dishuck, Philip C.

AU - Lahl, Katharina

AU - Jafari, Mohieddin

AU - Aibar, Sara

AU - Zaravinos, Apostolos

AU - Steenhuizen, Linda H.

AU - Allison, Lindsey R.

AU - Gamallo, Pablo

AU - de Andres Segura, Fernando

AU - Devlin, Tyler Dae

AU - Perez-Garcia, Vicente

AU - Ma'ayan, Avi

PY - 2016/9

Y1 - 2016/9

KW - FACIOSCAPULOHUMERAL MUSCULAR-DYSTROPHY

KW - ENDOMETRIAL CANCER-RISK

KW - ESTROGEN-RECEPTOR

KW - HEPATOCELLULAR-CARCINOMA

KW - DIFFERENTIAL EXPRESSION

KW - DATABASE

KW - DISEASE

KW - DISCOVERY

KW - INSULIN

KW - GROWTH

KW - 3111 Biomedicine

KW - 3122 Cancers

U2 - 10.1038/ncomms12846

DO - 10.1038/ncomms12846

M3 - Article

VL - 7

JO - Nature Communications

JF - Nature Communications

SN - 2041-1723

M1 - 12846

ER -