Abstract

Comparative genomics of the embryophytes (land plants) provide basis to understand their divergence and adaptation to the terrestrial environment. The focus of the genome sequencing has been on the understanding of the patterns of genetic development and adaptation, particularly of the crop and some model species. Rapidly increased transcriptome sequencing effort and availability of the ample genetic marker data have allowed comparisons of early embryophytes and tracheophytes (vascular plants). The key to understand the deepest nodes requires the availability of the genomes and high-quality gene models from the early lineages of the streptophytes to understand the genomic synteny, gene duplication and losses as well as the diverged genes across the streptophytes, and in particular embryophytes. We present the first genome assembly of Coleochaete orbicularis and compare it also with the recently released genome of Chara braunii, another freshwater green alga.
Original languageEnglish
Publication statusPublished - 29 Sep 2019
MoE publication typeNot Eligible
Event5th Conference on Plant Genome Evolution - Sitges, Spain
Duration: 29 Sep 20191 Oct 2019

Conference

Conference5th Conference on Plant Genome Evolution
Abbreviated titlePGEV
CountrySpain
Period29/09/201901/10/2019

Fields of Science

  • 1181 Ecology, evolutionary biology
  • 1183 Plant biology, microbiology, virology

Cite this

Sablok, G., He, X., Miranto, M., Peltomaa, E., Sleith, R., Karol, K., ... Hyvönen, J. (2019). First draft genome assembly of Coleochaete orbicularis. Poster session presented at 5th Conference on Plant Genome Evolution, Spain.
Sablok, Gaurav ; He, Xiaolan ; Miranto, Mari ; Peltomaa, Elina ; Sleith, Robin ; Karol, Kenneth ; Delwiche, Charles ; Bell, Neil ; Paulin, Lars ; Poczai, Péter ; Hyvönen, Jaakko. / First draft genome assembly of Coleochaete orbicularis. Poster session presented at 5th Conference on Plant Genome Evolution, Spain.
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title = "First draft genome assembly of Coleochaete orbicularis",
abstract = "Comparative genomics of the embryophytes (land plants) provide basis to understand their divergence and adaptation to the terrestrial environment. The focus of the genome sequencing has been on the understanding of the patterns of genetic development and adaptation, particularly of the crop and some model species. Rapidly increased transcriptome sequencing effort and availability of the ample genetic marker data have allowed comparisons of early embryophytes and tracheophytes (vascular plants). The key to understand the deepest nodes requires the availability of the genomes and high-quality gene models from the early lineages of the streptophytes to understand the genomic synteny, gene duplication and losses as well as the diverged genes across the streptophytes, and in particular embryophytes. We present the first genome assembly of Coleochaete orbicularis and compare it also with the recently released genome of Chara braunii, another freshwater green alga.",
keywords = "1181 Ecology, evolutionary biology, 1183 Plant biology, microbiology, virology",
author = "Gaurav Sablok and Xiaolan He and Mari Miranto and Elina Peltomaa and Robin Sleith and Kenneth Karol and Charles Delwiche and Neil Bell and Lars Paulin and P{\'e}ter Poczai and Jaakko Hyv{\"o}nen",
year = "2019",
month = "9",
day = "29",
language = "English",
note = "5th Conference on Plant Genome Evolution, PGEV ; Conference date: 29-09-2019 Through 01-10-2019",

}

Sablok, G, He, X, Miranto, M, Peltomaa, E, Sleith, R, Karol, K, Delwiche, C, Bell, N, Paulin, L, Poczai, P & Hyvönen, J 2019, 'First draft genome assembly of Coleochaete orbicularis', 5th Conference on Plant Genome Evolution, Spain, 29/09/2019 - 01/10/2019.

First draft genome assembly of Coleochaete orbicularis. / Sablok, Gaurav; He, Xiaolan; Miranto, Mari; Peltomaa, Elina; Sleith, Robin; Karol, Kenneth; Delwiche, Charles; Bell, Neil; Paulin, Lars; Poczai, Péter; Hyvönen, Jaakko.

2019. Poster session presented at 5th Conference on Plant Genome Evolution, Spain.

Research output: Conference materialsPoster

TY - CONF

T1 - First draft genome assembly of Coleochaete orbicularis

AU - Sablok, Gaurav

AU - He, Xiaolan

AU - Miranto, Mari

AU - Peltomaa, Elina

AU - Sleith, Robin

AU - Karol, Kenneth

AU - Delwiche, Charles

AU - Bell, Neil

AU - Paulin, Lars

AU - Poczai, Péter

AU - Hyvönen, Jaakko

PY - 2019/9/29

Y1 - 2019/9/29

N2 - Comparative genomics of the embryophytes (land plants) provide basis to understand their divergence and adaptation to the terrestrial environment. The focus of the genome sequencing has been on the understanding of the patterns of genetic development and adaptation, particularly of the crop and some model species. Rapidly increased transcriptome sequencing effort and availability of the ample genetic marker data have allowed comparisons of early embryophytes and tracheophytes (vascular plants). The key to understand the deepest nodes requires the availability of the genomes and high-quality gene models from the early lineages of the streptophytes to understand the genomic synteny, gene duplication and losses as well as the diverged genes across the streptophytes, and in particular embryophytes. We present the first genome assembly of Coleochaete orbicularis and compare it also with the recently released genome of Chara braunii, another freshwater green alga.

AB - Comparative genomics of the embryophytes (land plants) provide basis to understand their divergence and adaptation to the terrestrial environment. The focus of the genome sequencing has been on the understanding of the patterns of genetic development and adaptation, particularly of the crop and some model species. Rapidly increased transcriptome sequencing effort and availability of the ample genetic marker data have allowed comparisons of early embryophytes and tracheophytes (vascular plants). The key to understand the deepest nodes requires the availability of the genomes and high-quality gene models from the early lineages of the streptophytes to understand the genomic synteny, gene duplication and losses as well as the diverged genes across the streptophytes, and in particular embryophytes. We present the first genome assembly of Coleochaete orbicularis and compare it also with the recently released genome of Chara braunii, another freshwater green alga.

KW - 1181 Ecology, evolutionary biology

KW - 1183 Plant biology, microbiology, virology

M3 - Poster

ER -

Sablok G, He X, Miranto M, Peltomaa E, Sleith R, Karol K et al. First draft genome assembly of Coleochaete orbicularis. 2019. Poster session presented at 5th Conference on Plant Genome Evolution, Spain.